Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01069 ATGGGTGTGCTAGTAAGTTCGTCCTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCATCAAACTCAAAGCTAATTTCTTCGAACGAAACGGCGGATTAATGTTAGAGCAACAGCTTTCAATCCGCGATGAAGCCAACCAAACTGCAAAGATCTTCACCGCAGAGGAATTACGGAAAGCCACTAACAACTACTCCGACGACCGAATCGTCGGCAAAGGTGGCTTCGGAACCGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGGTTGTCGACAACGCTCAAAACAAGCAGTTCATCAACGAAGTCATTGTCCTCTCGCAGATCAATCACCGCAACACCGTCAAACTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAGTTCGTCTCCAACGGTACGCTCTTCGATCACATCCACAAGCGAAAATCGCCGCGGCCGATTCCCTGGAAGATCCGCCTTAAAATCGCATCGGAAACCGCTGGAGTTCTCTCCTATCTTCACTCATCGGCCTCGATTCCGATCATTCACAGAGATGTGAAGTCCACGAACATTCTCCTCGACGACAATTACACCGCGAAGGTCTCCGATTTCGGCGCTTCGAAGTTAGTTCCCTTGGATCAGGTCGATTTGAACACAATCGTGCAAGGAACTCTAGGATACCTAGATCCAGAGTATCTGCAAACCAGTCAATTAACAGAGAAGAGCGACGTGTACAGTTTCGGCGTTGTTCTCGTCGAATTAATGACCGGAAAAGTTCCTCTATCCTTCAGCCGATCGGAGGAAGAACGGAATCTGTCGATGTACTTTCTAATTGCTCTGAAACAGAATCGGCTGAGAGAAATTTTGGATAAAAATTTGGGCGGCGATGTGGAGTACGAGCAAGTGAAGGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAAAGTGAAAGGGGAAGAAAGGCCGACAATGAAGGAGGTCGCTGCAGAGCTTGAAGGGTTGTTTCATATGGCGTTTGGTCATCCATGGATGGTTGAGGATAAATCTCCATTAGTTGAAGAATCAGAGGTTTTGTTGAGGGAAGAAAAGGAGAATGAGAAGGAAGATGGTGTTGATTGTGTTCGTCGCGAGGTTGAATCTGGAACTGAGTGTACGGAAGAGAGTAACCGATATGATAGCTTTCCCACTAACCAAATGATACCAAAAGCAGATTCTGGGAGATAA 1233 47.53 MGVLVSSSWFYIGFKRWKLIKLKANFFERNGGLMLEQQLSIRDEANQTAKIFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKVVDNAQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSPRPIPWKIRLKIASETAGVLSYLHSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLIALKQNRLREILDKNLGGDVEYEQVKEVASLAKRCLKVKGEERPTMKEVAAELEGLFHMAFGHPWMVEDKSPLVEESEVLLREEKENEKEDGVDCVRREVESGTECTEESNRYDSFPTNQMIPKADSGR 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8592936 8594168 - CmoCh01G010690.1 Cmo01g01069 374552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01069 410 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 3 353 IPR045274 GO:0007166
Cmo01g01069 410 MobiDBLite consensus disorder prediction 380 410 - -
Cmo01g01069 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Cmo01g01069 410 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 3 353 - -
Cmo01g01069 410 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Cmo01g01069 410 Gene3D Phosphorylase Kinase; domain 1 31 139 - -
Cmo01g01069 410 SMART serkin_6 64 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01069 410 CDD STKc_IRAK 70 337 - -
Cmo01g01069 410 MobiDBLite consensus disorder prediction 390 410 - -
Cmo01g01069 410 Gene3D Transferase(Phosphotransferase) domain 1 140 343 - -
Cmo01g01069 410 SUPERFAMILY Protein kinase-like (PK-like) 48 339 IPR011009 -
Cmo01g01069 410 ProSiteProfiles Protein kinase domain profile. 64 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01069 410 Pfam Protein kinase domain 64 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01069 Cmo04g02519 CCT
Cmo01g01069 Cmo15g00654 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01069 Cmo-Chr1:8592936 Cmo04g02521 Cmo-Chr4:18557946 8.68E-166 dispersed
Cmo10g00844 Cmo-Chr10:3979960 Cmo01g01069 Cmo-Chr1:8592936 4.71E-33 dispersed
Cmo01g01069 Cmo-Chr1:8592936 Cmo15g00654 Cmo-Chr15:3163820 1.90E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74043 PF00069 Pkinase 6.20E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01069 - - mcha:111021159 652.514