Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01072 ATGCTCGAGAACGAAATGGAGGAAAGCCGTAGTGGTACCATAAAGATCAGCGACGTTTCATTCGACGCCCTCCGCGCCTTCGTTAATTATCTGTACACAGCAGAAGCCTGTCTTGATGAACAGATGGCTTATGAGCTTCTAGTTTTGGCTGAAAAGTACGAAGTGAAGCATCTGAAGGCTCATTGCGAGAAGTTCCTGATATCAAAACTGAATTGGGACAACTCAATCTTGAACTACACCTTTTCCCATCGGCACAATGGGAAGCATATGATTGATGCAGCGTTAGCAGTGATTATTGAGAACATGGACAAGCTTACCAAAAGGGAGGAGTACATGGAGCTCGTCGAAACAGATCCACGGCTTGTCGTCGAAATCTTTGAAGCTTACATGTCGAAACAGGTAAATACTGCTGCTTCTAAGGATTGTTGTGTGGAATAA 438 44.29 MLENEMEESRSGTIKISDVSFDALRAFVNYLYTAEACLDEQMAYELLVLAEKYEVKHLKAHCEKFLISKLNWDNSILNYTFSHRHNGKHMIDAALAVIIENMDKLTKREEYMELVETDPRLVVEIFEAYMSKQVNTAASKDCCVE 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8943517 8943954 + CmoCh01G010720.1 Cmo01g01072 374555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01072 145 Pfam BTB/POZ domain 1 69 IPR000210 GO:0005515
Cmo01g01072 145 ProSiteProfiles BTB domain profile. 1 40 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01072 K10523 SPOP; speckle-type POZ protein - csv:101206278 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01072 Cmo-Chr1:8943517 Cmo15g00166 Cmo-Chr15:774854 9.69E-08 dispersed
Cmo01g01072 Cmo-Chr1:8943517 Cmo09g01056 Cmo-Chr9:5716181 4.83E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9089 PF00651 BTB 1.20E-13 CL0033 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01072 Cmo_Chr01 FPKM 2.185495 1.438362 1.154298 1.065354 0.868219 1.104447 0.775474 5.669856 4.948332 5.715992