Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01075 ATGGATTTGCCTCCATTTCTTTACCACCAACGGGATCAATCCAGGTATATCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCGCCCCTCTTCCTCACCTTTTTTTTCCGGACGATCCCAATTTCCACTTCCCTTCCAATCACCATCAGGTTCTTCATAACATTCCCGATAAAGGGCTAGATTTCCCTCTGCGGCCGCCACCGCCACCGCCGTCGTACCGTCATCCTACGATTCATCCACTCCCGTCACAAGCATCGCCGCTAGGTTATAATCCCTCTCAACCACACTTTGTTGTTTCTTCCTCGATTCACGATGACCAATTGAGGTCTCCCCACCCTATTCGTGAATTTCCGCGCTCCCCTCCGCTTTCCAGTCGAGTTTCTTTCGACGGAGGTTTTCACCGCGATTTTGTTGACCTAAATCATTCGTTCCATGAAACTCGGTTTGATGTTTCGGATCCATCGAGAGGCTCTGCGGATAATCGACCTCCAATTCCGCATTCTCCTATCGATTTTCAGCATGGAGCTGGCCACCGAGAAATTGATTACAGATCTGTCATGCCGTATCCGCCCCCTGATATGTTTAGGTATAGTTCAGGTAGTAGTTCTAGGAGGGGAGCGGAATACAATGATAGATTTCAGACAAATCCAAGAGAAGAGGTGCTACGGGGACGAGGTGAGGAGAATTATTATCACCACGATCAGCTTAAAGCTGATTCCAATATCACCTTTATGGAATCTGGAGCGTTGCAGAGTCCATTATCTAGAGATAACAAATTTACTTCTGGTAGTTTTGATAAACATCGCTATGGCTCGAATTATGAAAAAGAATCTTTTAGGAGTCGTAGGAATGGTAATGTGGTGGGTAAAAATCAGAGATGGGTTCATAGCAAACAAACCTTTAGAAACATGCACAATTCGTACTCAGATGGAAGCAATGATAGAGGATATGGTGACCGTTGTGATTTTCGAATTATGTCTGGTAAGCATGGACATTCCAATCCAGAATCAGGAAAATATTACAGTGACAATAAGGATAGTATAGAAGGTTATAATGAGTACGCGTCCACTCCACGGAAGCAGGTACAGAAAAAGAGTGCTTTTCTCAGAATTCAGATGGCAAATCCTTGTCACAGTAACCGAGAGAGTGAACAATTGCACGATTCTGATTATTTCGATGAGAAGAACGGTTTCCACAGAGGCAAAAATCAGGTTCGATCTCAGGGCTACAGAATAGATGCAGGGAAGAAGAGACAGGGAAGTCCTATGGAGCTTGATGTTTCTTTTAAATCCAATTCATTGGTGGCCAAGGCGATCGTGACACCAACACAGTCTGCTCCGACTTCTCATATGGATAAAATGCCTGGATATGAAAAAACTACAAATGTTTTGGTTCCCGTTCCCCACCATAACTCTACTGACTTGCATTTAACGGGAAAGAACAAGGATGATTTAGGCACAAATGATGTTACAAATCCTGCCCCATGTCCCCCAGGTTCTAAAAATGAGCTGAAAGAATCAGAAGAGAAGGCTACAGGTTCGTTGGCTGGTAATGGATCTAACAATTTAACAGATGCTTCTCTGGTTAAGGGCAATTATTCACTTAGAAAAACTAACGTTGAACGACCTTCACAAGGAATGGTGTCAGGTATAAAAGGAAGGAATGTTTATGGAAAAGTAGCTACTGTGAGAACCATGAAGAAGAAAAAGGTTGTGAGGAAAGTAGTGAAGAAGGTAGGAAGTCCCCGACTGTATTTACAGACAAGAAACAGCAATGTTGACCCTTTGAAAGCATGTAGTTTGAAAAATATTCCGCCGGTGTCAGAAAACAAGTCTTCCACATCTGGAATGAACTCAGATCATGGTTCTGCGTTGAAGGCTTCTCTGCATGGTATGTCTGGATCGCTAGATAATGGAAAAGCAGATCAGTCTGTCCTGCCTATAACATCAGAAGAGTTTCAAGCCAACACTGATATGGGCTTGGAGTGTGTACCTGCAGATGATAGTAATAAAAATAACTTCGATTCTCCATTGAACCCCTTGATAAAAGAGGCAAGAGGATCTAATTCTAATAAGGATCTTAAACTATCAAATGGACCTAATGACTTCGATTTTGAATGTCAGAAGTCAATCAAGCCTAAACTTTGTGGGAATGAAGAAGATTTGTCACTTGAGAATGTATATAGTAAAGGGTCTAAATCTATCATGTTTTCCCTAGGAAGCAGTCAGTCTGGAATAGTGAGTTCAAATGATCCTAATCTACATGATAATCTTGTAAAGGGAAATAGTTTGGCTGTTAATAAAGACGTTCCCATGGATTTTGATAATGGGGTAACTCAGGTTCAAGATAATTCACTTTGTGAAACTTTTTTAGCTGATGGAATTTGCCAGCAATGTGCCAACAGGGTAACTGGACCTCCTGAGACTGATGTCGTGGGAGTATCTGCAGCAAAAGTTACAATTAGAAATTCTTTGGTGGGCGTAAATCCAGAAGCATCGGAAATGCAGCAGATTGATTCCAAAAATTTGCAAGTCTATAACAGTGGACAACATACTAATCAAGATTCAAATGACTGTCGTCAGTGTACTAATATACGAGTGAATGAGGTTCTTAATTGTGAGAGGATTGGTAGTGCAATGAGAGAATCGAAAGCTATGGATAGTTCTGTTTCACTAGGTATTAGTTCGGTAGAAAGATCTGCCAAAGATAAGGTTTCAATTAGTGGTGGACAAGGTGAGAAATCTTTGTCAAAGATGAGTAAAATTAAAAATTGTTTGGATTTTGCAGGTTCTCGTGACATCAATCAGAAGACGAATTCTGAGGATTTATGTGTACGTTCTAATTCTAAAAATTATTGCCCTTCAGAGCAGGGTGTTTCTGGTGATGGAAGCATAATAATAGATGTAAATCCTACCACCACTGAAGAGAGTCCAATGCCTGATTTCAATTTATTAGGTAAGTCGTCAAAAAATAAGTTGTCAATGGGCTTTGATGTTAATAATAGAGGAAATGACATCAAGTCCCGAAAGAAGCGAAAGATATGCATTGCTAGTCCTGTTTTGCCTTGCCCCAGTGTTGAATCTAATGAAGGGCCTGCACTTACAGTCATCTCTAGTTTAAACGATCAGTTAACCTCTAATGTTGAGTTAATGGAAGGAGAGGAGGTTGCAGCATCTACTGTGGATGCTTTTTTCAAAGCTAGTCCTGTTTCTACAGATTGTTCGAAAGGGATCAGCAAGATGCTCGATGAGATACCGAAAAAAGAAGATTCCAAAAAAATAAATATTGATGATGGTCCTTTTGAGTATTGCTTGAAATATGAACAACCAGAAAACTCTCGCTCAATCCAGGAGGAGTTGATTGTTTCAAAATGTCAACCACTTTCTTCATTGGGAAATGAGAAAGAAGACAGCAGTACTCCCACAATGGCACCAAATCAAAGAAATGATATGGATGTAGTGATTTGTAGAAGAAAAGAACTAAATATTCATGCTGAAGCACAATCTATGCTTTGTAATAAGACTGCACAGTGGGATAGTCCTCAAGTTCCATCCTCTCAGACCTTAAATTTTTCATATCCAGAAGCAGTTAAAGCGTCTTGTAATCTTGGCCAGGATAATGTGCATCATATAGAAAGATGCGCTGATGGTGGCAGCTGCCTCACTGCCAATTCTGACAATGAAATTATAGGCATTGCGAGTGACACCCAAGGTGATTTGGGTTCTCCAGAAACCTCCAATGTTCAAGGGATAGATAAATTACATTGTGAGGTATCTCTCAGAAATATTGACTTCAAAATGGATTGTGAATATGACAAAAAGGTGAAGGAGAAATCTAGTGCTGAAAATGAATTAAGGGCATCGAATGATACTTCATTTCCACAGCCTACGACCATTAATCAGAAATTAGGTTGCACCAATTCTGACAACAATTTGACTGCTGGCAAAGTAGTACCACGGGCATTGGTAGAATTAAAAAGTGGACTCCAAGCTGACAATCATTCTGCCAACTCGTGCAAAAAAAATCAGAATATGGTTTATCACAAATATCAGACAATTCCTGGTAAATCTTTTTCCACATGCACTGCTTCAAAGAAGATAGCATCTGATAAAAGTTTTCTTGGTACAAAACCCCGAAGTTGGCATCGGAATGTTAACACTTTAGTTCCAGCTCCTGGAAATGCGGCTTTATCAAGTACTATTCCTTCTCAAGGGCAGTTACATGGTGGAGATGGAATGCTTGAGAGTACTTTGTACATTCGTAAAGGTAACAGCCTAGTTCGAAAACCATCTCCAGTTGCAGCTCGAGTTTCAGGCTCCCATGATTTAAGTTCAAGCTCATCTGATCAACATGATTGCAGACCTAATATAAAATCTAATGGTAAGGTTGAGGTGGCTAATCCTCCTGTCCATTTTAAAGTAAGGGGAACTGATGTTCCTATTGATAAGCCCTTTCCTCCCCAACTATCTAGTGGGTCTGGGTCGCCCAATCATCCTATTCCCAATGCAGATTATGCACCATCTCCTTGCCATGAACCTGAATCAAATCTCACGAAGTCTAAACATGTTAGTGATCTGTCTAGGTCTGTTGGGGATCCCTCGAAGATTTTTGTAGCTCCTAAAAGCCTGGTTGGTACTGCTGATAAGAAAGAACATCTGACTGAAAAAAAAGACAAGAATTTTGTTTCTTCAGTTGTAAAAAAGATGGTGTATGTAAAGCGCAAGTCAAATCAGTTGGTTGCTACTTCAAAACCCTGTAATTTATCAACTAAAAATATGGAGACTACTTGTTCCTTGGCCTCCGATGGCTATTACAAGAGGAAAAAGAATCAGTTGATCAGGGCATCATCAGAATGTCAGAAGAAGCAGACTTCACTCCCCACCGAAGATATTTTGAACCCAGGAGGTCCAAGCTCTTATGGGGATGGAGATGCTAGAAGTTTTGATAAGAGACAACAATATAAAGCTGTAGTGAAAACATATAGGCCGTCAAAGTCCTCTTTGGTATGGACACTTCGCAGTTCTGTTGCTCCAGGAATTGTTGGTGGTAATTTGCAGAATCATAAGATGGCTCCTCGTCTTTTTCCTTGGAAAAGATCACATTGGCAGACCTTCAAGCTAAACGCTTCTACTCAGAGAAACAGCTCTTTCTCTATTGTCAGGCATGTGGTGCATGATTTCTGTTCTTATTTATTTATGTTTCTCTTTTCAACAAAAGGTGGCTGTTTGGCTCAACAAGTGGAAGCTACGAGGGCAGTTGCTGATGTCGAAAGGAAGAAAAGGGAGCGTAATTTGGATGCATCTATTTCCTCTGATGCTCCGGGTGGAAATCAGTTCTCCTATGACCAAGCATCTGGTTCTACTACTCTGCAACCAAAAAAGAGTGCTAAGAAATTTTTTATTCCACGGAGTCTAATGATTGGAAATGACGAATATGTTAAGATTGGAAATGGCAATCAATTAGTCAGAAATACAAAAAGACGAGCACGCATATTGGCAAATGAGAAAATTCGATGGAGTTTGCACACTGCAAGACAGCGTCTGGCTAAGAAGCGGAAGTACTGTCAATTTTTCACAAGATTTGGCAAGTGTAACAAAGAAGGTGGCAAGTGCCCTTATATTCACGACACTTCCAAGATTGTAGTCTGCACAAAATTTCTTAATGGTTTATGCTCTAACGCAAGCTGCAAATTGACTCATAAGGTCATTCCAGAAAGGATGCCTGATTGTTCATACTTTTTACAGGGTTTATGCAGCAGCAAAAATTGTGCTTATAGACATGTAAATGTGAACTCAAAGGCCCCTACTTGCCAGGCTTTTCTCAGGGGTTATTGTGCTCTTGGTAACGAGTGCCGTAAGAAGCACAGTTATGTATGCCCCTTGTTCGAAGCAACAGGTACATGTCCTGATAGACCCAAGTGCAAACTTCACCATCCTAAAAGACAAACTAAAGGAAGAAAAAGGAAACGATCAGAAGGGAAGAATAACGATCAAGGACGGTACTTTGGTTCTAAGAAATACGATGTTTCTGGGTCGAGAATGGTGGTGAGTGAGAAGCATCCTGTTAAGTTGAGTGACCCTTTTCCTGAAAAAGATCTGGCAGATTATATCAGCCTTGATGTTTCTAGTGATGAAGAGATTGCAGAAAGCCCCGACTCAACGAGCTTGAGTACGTCCTTTTGCGAAGGTTACCTCTCAGAGTTACTACTAAACAATCCCGACAAGCTAATCAAACCAGTTCGGATAATGACCGAGAATCTGACGATGCAATCGCTGGCAAACTGA 6291 41.0 MDLPPFLYHQRDQSRYISPPPPPPPPPPSSAPLPHLFFPDDPNFHFPSNHHQVLHNIPDKGLDFPLRPPPPPPSYRHPTIHPLPSQASPLGYNPSQPHFVVSSSIHDDQLRSPHPIREFPRSPPLSSRVSFDGGFHRDFVDLNHSFHETRFDVSDPSRGSADNRPPIPHSPIDFQHGAGHREIDYRSVMPYPPPDMFRYSSGSSSRRGAEYNDRFQTNPREEVLRGRGEENYYHHDQLKADSNITFMESGALQSPLSRDNKFTSGSFDKHRYGSNYEKESFRSRRNGNVVGKNQRWVHSKQTFRNMHNSYSDGSNDRGYGDRCDFRIMSGKHGHSNPESGKYYSDNKDSIEGYNEYASTPRKQVQKKSAFLRIQMANPCHSNRESEQLHDSDYFDEKNGFHRGKNQVRSQGYRIDAGKKRQGSPMELDVSFKSNSLVAKAIVTPTQSAPTSHMDKMPGYEKTTNVLVPVPHHNSTDLHLTGKNKDDLGTNDVTNPAPCPPGSKNELKESEEKATGSLAGNGSNNLTDASLVKGNYSLRKTNVERPSQGMVSGIKGRNVYGKVATVRTMKKKKVVRKVVKKVGSPRLYLQTRNSNVDPLKACSLKNIPPVSENKSSTSGMNSDHGSALKASLHGMSGSLDNGKADQSVLPITSEEFQANTDMGLECVPADDSNKNNFDSPLNPLIKEARGSNSNKDLKLSNGPNDFDFECQKSIKPKLCGNEEDLSLENVYSKGSKSIMFSLGSSQSGIVSSNDPNLHDNLVKGNSLAVNKDVPMDFDNGVTQVQDNSLCETFLADGICQQCANRVTGPPETDVVGVSAAKVTIRNSLVGVNPEASEMQQIDSKNLQVYNSGQHTNQDSNDCRQCTNIRVNEVLNCERIGSAMRESKAMDSSVSLGISSVERSAKDKVSISGGQGEKSLSKMSKIKNCLDFAGSRDINQKTNSEDLCVRSNSKNYCPSEQGVSGDGSIIIDVNPTTTEESPMPDFNLLGKSSKNKLSMGFDVNNRGNDIKSRKKRKICIASPVLPCPSVESNEGPALTVISSLNDQLTSNVELMEGEEVAASTVDAFFKASPVSTDCSKGISKMLDEIPKKEDSKKINIDDGPFEYCLKYEQPENSRSIQEELIVSKCQPLSSLGNEKEDSSTPTMAPNQRNDMDVVICRRKELNIHAEAQSMLCNKTAQWDSPQVPSSQTLNFSYPEAVKASCNLGQDNVHHIERCADGGSCLTANSDNEIIGIASDTQGDLGSPETSNVQGIDKLHCEVSLRNIDFKMDCEYDKKVKEKSSAENELRASNDTSFPQPTTINQKLGCTNSDNNLTAGKVVPRALVELKSGLQADNHSANSCKKNQNMVYHKYQTIPGKSFSTCTASKKIASDKSFLGTKPRSWHRNVNTLVPAPGNAALSSTIPSQGQLHGGDGMLESTLYIRKGNSLVRKPSPVAARVSGSHDLSSSSSDQHDCRPNIKSNGKVEVANPPVHFKVRGTDVPIDKPFPPQLSSGSGSPNHPIPNADYAPSPCHEPESNLTKSKHVSDLSRSVGDPSKIFVAPKSLVGTADKKEHLTEKKDKNFVSSVVKKMVYVKRKSNQLVATSKPCNLSTKNMETTCSLASDGYYKRKKNQLIRASSECQKKQTSLPTEDILNPGGPSSYGDGDARSFDKRQQYKAVVKTYRPSKSSLVWTLRSSVAPGIVGGNLQNHKMAPRLFPWKRSHWQTFKLNASTQRNSSFSIVRHVVHDFCSYLFMFLFSTKGGCLAQQVEATRAVADVERKKRERNLDASISSDAPGGNQFSYDQASGSTTLQPKKSAKKFFIPRSLMIGNDEYVKIGNGNQLVRNTKRRARILANEKIRWSLHTARQRLAKKRKYCQFFTRFGKCNKEGGKCPYIHDTSKIVVCTKFLNGLCSNASCKLTHKVIPERMPDCSYFLQGLCSSKNCAYRHVNVNSKAPTCQAFLRGYCALGNECRKKHSYVCPLFEATGTCPDRPKCKLHHPKRQTKGRKRKRSEGKNNDQGRYFGSKKYDVSGSRMVVSEKHPVKLSDPFPEKDLADYISLDVSSDEEIAESPDSTSLSTSFCEGYLSELLLNNPDKLIKPVRIMTENLTMQSLAN 2096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8949855 8960061 - CmoCh01G010750.1 Cmo01g01075 374558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 150 177 - -
Cmo01g01075 2096 ProSiteProfiles Zinc finger C3H1-type profile. 1933 1960 IPR000571 GO:0046872
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1432 1520 - -
Cmo01g01075 2096 ProSiteProfiles Zinc finger C3H1-type profile. 1851 1880 IPR000571 GO:0046872
Cmo01g01075 2096 PANTHER CCCH ZINGC FINGER 1246 2087 - -
Cmo01g01075 2096 PANTHER CCCH ZINGC FINGER 418 1190 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1282 1307 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1 38 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 16 35 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1440 1456 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 469 527 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1287 1307 - -
Cmo01g01075 2096 ProSiteProfiles Zinc finger C3H1-type profile. 1906 1932 IPR000571 GO:0046872
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1979 2004 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1772 1791 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1766 1791 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 1626 1647 - -
Cmo01g01075 2096 Gene3D - 1878 1932 - -
Cmo01g01075 2096 MobiDBLite consensus disorder prediction 399 425 - -
Cmo01g01075 2096 Gene3D - 1933 1995 - -
Cmo01g01075 2096 SMART c3hfinal6 1906 1931 IPR000571 GO:0046872
Cmo01g01075 2096 SMART c3hfinal6 1853 1879 IPR000571 GO:0046872
Cmo01g01075 2096 SMART c3hfinal6 1960 1982 IPR000571 GO:0046872
Cmo01g01075 2096 SMART c3hfinal6 1880 1904 IPR000571 GO:0046872
Cmo01g01075 2096 SMART c3hfinal6 1933 1959 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01075 - - - cmax:111480500 3938.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01075 Cmo-Chr1:8949855 Cmo18g00481 Cmo-Chr18:3313163 3.76E-08 dispersed
Cmo01g01075 Cmo-Chr1:8949855 Cmo13g00524 Cmo-Chr13:6146907 1.92E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g208 . . . . . . . . . . Cma01g01036 . Car01g00911 . . . . . . . . . . . . . . . . . . Cone4ag1435 Cone7ag1500 . . . . . . Blo17g00165 . . . . Bpe14g00400 . Bma02g00201 . Cmo01g01075 . . . . . . Cpe02g00855 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003643 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 3 12 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9090 None None None None Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01075 Cmo_Chr01 FPKM 10.440705 14.168485 6.178954 5.47121 26.713324 27.206602 20.64942 0.437786 0.563282 0.2299