Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01094 ATGAGCGTCATCGACCTTTTGACCAGAGTAGATGCGATCTGCCAGAAGTATGACAAATACGACGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGACGATGCCTTTGCTCGACTTTATGCTACTGTCGAAGCCGACATTGAAGCTGCCCTCCAGAAAGCGGAGGATGCTTCCAGAGAAAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACTAAGGCTCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTCTAAAGAGGGTGAAGGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCCGAAAGGATTCAAGCCATACCAGATGGGACTGCTACTTCCACGAAGAAGAATGGGGGTTGGACATCCTCTGCTTCACGCACTGAAATAAAATTTGACTCAGACGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCGAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGACACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATCGACACTAAGGTGGACAAGGCTGCATCTGATCTTAAGAATACCAACGTCAGATTAAAGCACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTATTGTGCATAATCTTGGGTATTGCTGCCTACCTATACAAGACTCTGATCGATTATGATGGATAA 807 45.85 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASREKNRASVVALNAEIRRTKARLLEEIPKLQRLALKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKHTVNQLRSSRNFCIDIILLCIILGIAAYLYKTLIDYDG 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9117464 9120857 + CmoCh01G010940.1 Cmo01g01094 374577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01094 268 SMART tSNARE_6 165 232 IPR000727 -
Cmo01g01094 268 CDD SNARE_Qc 175 231 - -
Cmo01g01094 268 Coils Coil 40 67 - -
Cmo01g01094 268 Gene3D - 170 231 - -
Cmo01g01094 268 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo01g01094 268 Coils Coil 70 90 - -
Cmo01g01094 268 Pfam SNARE domain 207 256 IPR000727 -
Cmo01g01094 268 PANTHER SYNTAXIN-73 1 261 - -
Cmo01g01094 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cmo01g01094 268 SUPERFAMILY SNARE fusion complex 163 230 - -
Cmo01g01094 268 PANTHER SYNTAXIN 1 261 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01094 Cmo-Chr1:9117464 Cmo02g00885 Cmo-Chr2:5474935 5.97E-123 dispersed
Cmo01g01094 Cmo-Chr1:9117464 Cmo14g00195 Cmo-Chr14:879672 2.98E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01094 K08506 - csv:101215905 483.026