Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01098 ATGGAATCGGATACAAGAGCCAAGAACCTTCATTTTCTTTCTCTCTCCACTTTCTCTCTCTCTCTCTCCCCTTCTTCCTCCTTTGTTTCTCACTTTCTAAGCAATTTCACGTCGAAAGGAATTTGCATACGTTACCTGATCGCCGCGGGATTTCGATTGGATCTGCTGCGTAATCGTACTGTTAAGATCCTGGGCATGGGCTCTGCTTCAGTTGCTGATTTACTAGAGGCCTCATCAGGCGTGCATTTTTCTGGGCTTTATATCGATAGTTTGAAGCAACAAAATGGACATACGAAGAGCTTGATGTCAGGAACTGAAAATTTTCAAAAACAACCTTTTGTCATAGGGGTTGCGGGTGGTGCGACCTCTGGAAAGACAACCGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTCGTACTTGTAAACCAGGATTCCTTCTATCATTATTTAACTTCAGAGGAACTTGCACAAGTCCATGAATACAACTTTGACCATCCTAATGCATTTGACACAGAGGAACTTTTAAGTTCGATGGAGAAATTGAGGCATGGGGAGTCTGTAGATATTCCAAAATATGACTTCAAGAGTTACAAAAATAACGTTTTTCCACCAAGAAGGATTCTCAAGGTTAACCCTGCAGATGTTATCATTTTGGAAGGAATTCTCGTTTTCCATGACCCTCGTGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTAGCGAGAAGGATTAAGCGTGATACTGTGGATAAGGCTAGAGACATAGCTGCAGTACTCGATCAGTATTCAAAATTTGTAAAGCCTGCATTTGATGACTTCATACTTCCAACAAAGAAGTACGCTGATATCATCATCCCCAGAGGGGGTGACAATCATGTTGCCATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGATCTTTGTAAAATATACCCTAATTTATATGTTATCCAGTCTACCTTCCAGATACGAGGCATGCATACATTAATACGAGATGCTAAAACCACAAAGCATGATTTTGTGTTTTATGCCGACCGGTTGATTCGTCTGGTTGTTGAACATGGTCTGGGACATTTACCATTTACAGAGAAGCAGGTGACAACTCCAACTGGATCTGTGTACAGTGGTGTTGATTTCTGCAAGAGGTTATGTGGTGTATCTGTCATCAGGAGTGGTGAGAGTATGGAAAATGCTCTGCGGGCATGTTGTAAAGGCATCAAAATTGGAAAGATTCTCATTCATAGGGAAGGCGACAATGGTCAACAGTTAATTTATGAAAAACTACCCTCTGATATCTCCAATAGACATGTATTACTATTGGATCCCATCCTAGGCACAGGGTATTCAGCGGTGCAAGCTATTTCTTTGCTCATACGCAAGGGTGTTCCAGAGCCTAATATTATATTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTATGCAAACGTTTTCCAAGAATAAAGATAGTGACCTCTGAAATAGAGATTGGTCTGAATGAAGATTTTCGTGTGGTGCCCGGTATGGGTGAGTTTGGGGACCGATATTTCGGAACCGACGATGATGAAGAAGTGAGGCCTCTCCACAGTAATCGTTCTCTCAAGTAA 1653 41.44 MESDTRAKNLHFLSLSTFSLSLSPSSSFVSHFLSNFTSKGICIRYLIAAGFRLDLLRNRTVKILGMGSASVADLLEASSGVHFSGLYIDSLKQQNGHTKSLMSGTENFQKQPFVIGVAGGATSGKTTVCDMIIHQLHDQRVVLVNQDSFYHYLTSEELAQVHEYNFDHPNAFDTEELLSSMEKLRHGESVDIPKYDFKSYKNNVFPPRRILKVNPADVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIKRDTVDKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGYSAVQAISLLIRKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNEDFRVVPGMGEFGDRYFGTDDDEEVRPLHSNRSLK 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9132957 9140276 - CmoCh01G010980.1 Cmo01g01098 374581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01098 550 SUPERFAMILY PRTase-like 318 535 IPR029057 -
Cmo01g01098 550 CDD PRTases_typeI 392 507 IPR000836 -
Cmo01g01098 550 PANTHER URIDINE KINASE-LIKE PROTEIN 3 83 536 - -
Cmo01g01098 550 CDD UMPK 114 315 IPR000764 -
Cmo01g01098 550 PRINTS Uridine kinase signature 283 296 - -
Cmo01g01098 550 PRINTS Uridine kinase signature 261 272 - -
Cmo01g01098 550 PRINTS Uridine kinase signature 112 129 - -
Cmo01g01098 550 PRINTS Uridine kinase signature 187 202 - -
Cmo01g01098 550 PRINTS Uridine kinase signature 142 153 - -
Cmo01g01098 550 PRINTS Uridine kinase signature 247 257 - -
Cmo01g01098 550 TIGRFAM udk: uridine kinase 111 315 IPR000764 -
Cmo01g01098 550 PANTHER URIDINE KINASE 83 536 - -
Cmo01g01098 550 Gene3D - 319 534 IPR029057 -
Cmo01g01098 550 Pfam Uracil phosphoribosyltransferase 333 534 - -
Cmo01g01098 550 Pfam Phosphoribulokinase / Uridine kinase family 114 303 IPR006083 GO:0005524|GO:0016301
Cmo01g01098 550 Gene3D - 108 318 IPR027417 -
Cmo01g01098 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 308 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01098 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101219714 896.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01098 Cmo-Chr1:9132957 Cmo11g01624 Cmo-Chr11:11584968 0 dispersed
Cmo01g01098 Cmo-Chr1:9132957 Cmo09g01036 Cmo-Chr9:5556538 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo20g00810 CST 79 559 PRT Gene Family AT2G16570 84.5 1.1e-239 826.6
Cmo02g00360 CST 70 556 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cmo02g00360 CST 72 556 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cmo20g00810 CST 79 559 PRT Gene Family AT4G34740 85.3 7.4e-241 830.5
Cmo20g00810 CST 57 532 PRT Gene Family AT4G38880 72.9 1.1e-198 690.3
Cmo02g00360 CST 69 529 PRT Gene Family AT4G38880 73.0 2.2e-194 676.0
Cmo12g00534 CST 74 256 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cmo15g01204 . 7 180 PRT Gene Family AT1G27450 73.6 4.8e-72 268.1
Cmo05g00147 CST 74 328 PRT Gene Family AT1G27450 58.4 1.4e-66 250.0
Cmo05g00378 CST 63 235 PRT Gene Family AT1G27450 69.4 2.3e-66 249.2
Cmo12g00294 CST 11 186 PRT Gene Family AT1G27450 68.2 7.4e-65 244.2
Cmo16g01113 . 7 145 PRT Gene Family AT1G27450 74.8 1.7e-56 216.5
Cmo06g00788 . 7 145 PRT Gene Family AT1G27450 74.8 4.8e-56 214.9
Cmo05g00378 CST 85 241 PRT Gene Family AT1G80050 79.0 1.3e-65 246.5
Cmo12g00294 CST 33 191 PRT Gene Family AT1G80050 78.0 4.2e-64 241.5
Cmo15g01204 . 30 180 PRT Gene Family AT1G80050 74.8 3.0e-62 235.3
Cmo12g00534 CST 103 252 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cmo06g00788 . 30 145 PRT Gene Family AT1G80050 76.7 8.8e-46 180.6
Cmo16g01113 . 30 145 PRT Gene Family AT1G80050 74.1 4.4e-45 178.3
Cmo05g00147 CST 115 307 PRT Gene Family AT1G80050 54.4 1.3e-44 176.8
Cmo15g01204 . 5 97 PRT Gene Family AT4G22570 86.0 2.1e-43 172.2
Cmo16g01113 . 6 97 PRT Gene Family AT4G22570 87.0 6.0e-43 170.6
Cmo06g00788 . 5 104 PRT Gene Family AT4G22570 78.0 6.7e-42 167.2
Cmo12g00534 CST 80 170 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cmo05g00378 CST 63 152 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo12g00294 CST 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cmo15g01204 . 1 96 PRT Gene Family AT4G12440 83.3 2.6e-40 161.8
Cmo06g00788 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cmo16g01113 . 1 96 PRT Gene Family AT4G12440 81.3 2.8e-39 158.3
Cmo12g00534 CST 74 169 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cmo05g00378 CST 56 151 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cmo12g00294 CST 1 148 PRT Gene Family AT5G11160 81.8 2.0e-64 242.7
Cmo05g00378 CST 53 200 PRT Gene Family AT5G11160 81.1 2.2e-63 239.2
Cmo15g01204 . 8 145 PRT Gene Family AT5G11160 74.6 4.9e-55 211.5
Cmo06g00788 . 8 149 PRT Gene Family AT5G11160 71.8 2.7e-53 205.7
Cmo12g00534 CST 81 218 PRT Gene Family AT5G11160 71.0 3.5e-53 205.3
Cmo16g01113 . 8 148 PRT Gene Family AT5G11160 70.2 5.1e-52 201.4
Cmo05g00147 CST 81 246 PRT Gene Family AT5G11160 60.2 2.0e-48 189.5
Cmo09g01036 . 151 603 PRT Gene Family AT1G55810 85.5 2.3e-224 775.4
Cmo01g01098 . 81 537 PRT Gene Family AT1G55810 83.4 2.0e-220 762.3
Cmo11g01624 . 19 482 PRT Gene Family AT1G55810 75.1 4.2e-202 701.4
Cmo01g00411 . 19 482 PRT Gene Family AT1G55810 74.0 6.7e-200 694.1
Cmo09g01036 . 200 602 PRT Gene Family AT3G27440 77.2 1.3e-184 643.3
Cmo01g01098 . 131 550 PRT Gene Family AT3G27440 74.6 3.1e-183 638.6
Cmo11g01624 . 80 482 PRT Gene Family AT3G27440 75.4 1.1e-180 630.2
Cmo01g00411 . 80 482 PRT Gene Family AT3G27440 74.4 6.7e-178 620.9
Cmo11g01624 . 1 482 PRT Gene Family AT3G27190 86.5 1.1e-248 856.3
Cmo01g00411 . 1 482 PRT Gene Family AT3G27190 85.5 2.8e-244 841.6
Cmo09g01036 . 138 602 PRT Gene Family AT3G27190 72.9 3.7e-204 708.4
Cmo01g01098 . 68 536 PRT Gene Family AT3G27190 72.7 4.8e-204 708.0
Cmo03g00417 . 4 289 PRT Gene Family AT3G53900 66.0 7.4e-107 384.4
Cmo09g01036 . 136 603 PRT Gene Family AT4G26510 83.4 2.2e-230 795.4
Cmo01g01098 . 66 537 PRT Gene Family AT4G26510 82.3 6.4e-230 793.9
Cmo11g01624 . 7 482 PRT Gene Family AT4G26510 76.1 1.2e-212 736.5
Cmo01g00411 . 11 482 PRT Gene Family AT4G26510 75.0 2.5e-210 728.8
Cmo11g01624 . 1 482 PRT Gene Family AT5G40870 86.5 8.4e-249 856.7
Cmo01g00411 . 1 482 PRT Gene Family AT5G40870 85.9 1.1e-243 839.7
Cmo09g01036 . 179 605 PRT Gene Family AT5G40870 78.9 8.2e-204 707.2
Cmo01g01098 . 68 539 PRT Gene Family AT5G40870 71.5 3.1e-203 705.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01098 Cmo_Chr01 FPKM 24.437462 27.507793 4.837427 6.214014 3.748756 3.015803 4.367566 9.904806 9.602641 8.737319