Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01099 ATGCCGCAGGAATTCAGTTTTCGGAGTTCGATTTTGACGTCTCCGAACAAGAATATGAGAGGATTGAAGGCTCTGGTTCCGAATTGTAATGAGATTACTTCTAATTCCGCGATTTCTGAGGAAGTTATCAACGACGATGAATTGGCTCAGCGGAAAGCGGAAGAAGCTGCGTTGAGGAGGAATCAAGCAGTAGAATGGCTACGCCAAATGGATCATGGAGCATTAGGAGTACTATCGAAGGAGCCCTCAGAAGAAGAGTTCTGTCTCGCTCTTCGCAATGGCCTTATCCTCTGCATCGTCCTCAACAAAGTAAACCCTGGTGTTGTTCCCAAGGTAGTGGAGAGTCCAGTTCTGACAGTTCAATCAACCGAAGGAGCTGCTCAATCTGCAATCCAGTATTTTGAAAACATGAGAAACTTCTTGGAGGCAGTTAAAAACATGAAGCTCTTGACATTCGAAGCTTCCGACTTGGAAAAGGGAGGTACTTCTAGTAAAGTTGTGGAGTGTATTCTTTGCTTGAAAGGATACTATGAGTGGAAACAAGCTGGTGGGATTGGCGTTTGGAGATATGGAGGAACTGTACGGATCACATCTCTTGCCAAAAGTTCACCATCCGTGACTGGAACTGAGAGTACAGACGAGTCGGATTCGTCTCGGTTCGAGCAGCTACTAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCAAGAACTTGCAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTCAAACTTCTACAAGCTTACCTTAAAGAGACTAACGAAATTGAAGATTTCCCTTTAAATGCAATGGTAATTGATGCACTACTTAACAAGGTTGTCAAGGATTTCTCTGCACTGCTCATGTCTCAAGGCACTCAGCTTGGGCTCTTTCTGAAAAAGATGTTAAAAAGTGACTTAAGTTCATTATCGAAATCTGAATTCATAGAAGCAATTTCTCGATACATCAGTCAAAGAGCTAATATGGCATCAAGTGATATCTCCAAATTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCATAGGACTGCTTTTGGCCATGAAGAACAAGTTCGTGCTCAACAAAATCAAATTCAGGAGCTAAACTCAGCATTTCAAGAAACCAAGCTTGAAGTTAAACACATACAGTCCCAATGGAATGAGGAAGTTGAAAGGCTTGAACATCATCTCAAGGGCCTTGAAATGGCTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTATACTGTAGAGTGAGGCCTTTCTTGCCAGGACAAGCCAACCAGCATTCTACTGTTGACTATATTGGAGAAAATGGGAACATAATGATTGGAAGAAGAGTATTTTCCTTCAATAAAGTCTATGGAACTAATGTTACCCAAGGAGAAATATATATGGATACTCAACCATTGATCAGATCTGTTCTTGATGGTTTTAATGTATGCATCTTTGCATATGGACAAACGGGCTCGGGAAAGACATACACAATGAGTGGCCCAGATTTGATGAGTGAGGATACATGGGGTGTTAATTATCGAGCTCTCAATGACTTATTCCAAATATCAAATGCAAGATTGGATATGATAAAATATGAAGTTGGTGTTCAAATGATCGAAATATACAATGAGCAAGTGAGAGATTTGTTAGTCAGTGATGGCTCAAACAGAAGGTTAGATATACGAAACAACTCTCAACTAAGTGGCCTTAATGTACCTGATGCAAGCTGGGTTCCTGTGACATGCACTCAAGATGTTCTTCATTTGATGAACATTGGCCACAATAATCGAGCTATCGGTGCTACGGCGTTAAACGAGCGAAGTAGTCGTTCACATAGTGTTTTAATAGTTCATCTTCTTGGAAAAGATTTGGTGTCTGGATCCATCATTAGGGGGTGTCTTCATCTAGTTGATCTAGCTGGTAGTGAAAGAGTGGACAAATCTGAAGCTGTTGGTGACAGATTAAAGGAAGCACAACATATAAACAAATCCCTGTCTGCACTTGGAGATGTGATATCTGCTCTTGCACAAAAGAGTGCTCATATCCCTTACAGAAATAGCAAACTTACTCAACTCCTTCAAGATTCTTTAGGTGGACAAGCTAAGACATTGATGTTTGTACATATAAATTCCGAGGCCGATGCACTCGGAGAGACGATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCCATTGAATTAGGTGCAGCTCGTTGTAACAAAGAAAACAGTCAAATCCGAGAGCTTAAAGACGAGATATCGAATCTTAAATCAGCTTTAGAGAGGAAGGATACAGAGCTTGAACAGCTAAAGGGTGGCAATGCTCGAGCTCTTGGACACAATCAGAAGCCAAGAACTGCCTCGCCCTTTCGTGTTCTAAGACATGGTACTAATGGAGGTGCTAAGCCTGAACATAGTCAACGGCCTCTGGATGATACTAAAACTTTGAAGGCTAGAAGCTGCTCTTCAGGAAAGCAAAGAAGGTCAAGATTTCCCTCAACATTGACAGAGAAAGATGCAATAAAAATGAGATTGTTAGGTGAAGAGAGATCAACAACAAGTTCAAGCTCTGGAAATCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACAGATAGAGGTGCCCTTTTAAGAAGCAAGGTTAAGACAGAGACGAACGAGAACCAACCAATAGCAAAGCCTTCATCATTTCTTGATATCCAAAAAGCAGCAATGGGCTCAACAAAGAAGAAGCAACTAGTTTGCCAAGAAAAAAATGAGCAAGATTCAAGAAAGAGTGACTTCTCTGAGATGGAGAATGACCAGTTTCTTGGGGGAATGCCTCTTGGTGGTGCTTTGAAGGTGAAAAAAGTTTGTCACAACTTCCCGAGGAACTCTCAGAATCTGGAACCACCAAGAGTACAAGTTGGGGCTGTTGAAACTTTGCTAAGAACAAGTAGAGTTGAGAATGGGAGTCGCAATCAAAACAAAGTCCGCAATGGATCAATGCCTGAATTTGGAAGAAGCAGATCTACAACTCGCAGGGATCAATATGATAATGGAGATGAAACAATCAGAAAACAACACAGAAAAATGGTGCCTGCTGCTAATATTTTTGGTTTCTACATACACCAACATGTTATGCATCATTTCCAACCAAAATTAACTCACATTAACATGGATCTCTCTAATCAGTAG 3234 41.06 MPQEFSFRSSILTSPNKNMRGLKALVPNCNEITSNSAISEEVINDDELAQRKAEEAALRRNQAVEWLRQMDHGALGVLSKEPSEEEFCLALRNGLILCIVLNKVNPGVVPKVVESPVLTVQSTEGAAQSAIQYFENMRNFLEAVKNMKLLTFEASDLEKGGTSSKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLAKSSPSVTGTESTDESDSSRFEQLLDFLHLSNEVSVEESRTCSALAFLFDRFGLKLLQAYLKETNEIEDFPLNAMVIDALLNKVVKDFSALLMSQGTQLGLFLKKMLKSDLSSLSKSEFIEAISRYISQRANMASSDISKFCVCGGKREVIHRTAFGHEEQVRAQQNQIQELNSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLPGQANQHSTVDYIGENGNIMIGRRVFSFNKVYGTNVTQGEIYMDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMSEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLSGLNVPDASWVPVTCTQDVLHLMNIGHNNRAIGATALNERSSRSHSVLIVHLLGKDLVSGSIIRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINSEADALGETISTLKFAERVASIELGAARCNKENSQIRELKDEISNLKSALERKDTELEQLKGGNARALGHNQKPRTASPFRVLRHGTNGGAKPEHSQRPLDDTKTLKARSCSSGKQRRSRFPSTLTEKDAIKMRLLGEERSTTSSSSGNPRSPSPPVRRSISTDRGALLRSKVKTETNENQPIAKPSSFLDIQKAAMGSTKKKQLVCQEKNEQDSRKSDFSEMENDQFLGGMPLGGALKVKKVCHNFPRNSQNLEPPRVQVGAVETLLRTSRVENGSRNQNKVRNGSMPEFGRSRSTTRRDQYDNGDETIRKQHRKMVPAANIFGFYIHQHVMHHFQPKLTHINMDLSNQ 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9145484 9156099 + CmoCh01G010990.1 Cmo01g01099 374582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 833 847 - -
Cmo01g01099 1077 Pfam Calponin homology (CH) domain 60 178 IPR001715 GO:0005515
Cmo01g01099 1077 Gene3D - 49 178 IPR036872 -
Cmo01g01099 1077 PANTHER KINESIN-LIKE PROTEIN KIN-14F 32 914 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 1004 1039 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 932 947 - -
Cmo01g01099 1077 PRINTS Kinesin heavy chain signature 699 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 PRINTS Kinesin heavy chain signature 496 517 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 PRINTS Kinesin heavy chain signature 650 668 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 PRINTS Kinesin heavy chain signature 619 636 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 SUPERFAMILY Calponin-homology domain, CH-domain 59 195 IPR036872 -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 926 947 - -
Cmo01g01099 1077 Coils Coil 354 406 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 1021 1039 - -
Cmo01g01099 1077 Gene3D Kinesin motor domain 425 790 IPR036961 -
Cmo01g01099 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 786 IPR027417 -
Cmo01g01099 1077 Pfam Kinesin motor domain 455 749 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 SMART ch_5 59 176 IPR001715 GO:0005515
Cmo01g01099 1077 ProSiteProfiles Kinesin motor domain profile. 430 749 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 PANTHER KINESIN-LIKE PROTEIN KLP-3 32 914 - -
Cmo01g01099 1077 SMART kinesin_4 428 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 848 863 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 1004 1020 - -
Cmo01g01099 1077 ProSiteProfiles Calponin homology (CH) domain profile. 57 178 IPR001715 GO:0005515
Cmo01g01099 1077 Coils Coil 756 790 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 782 892 - -
Cmo01g01099 1077 MobiDBLite consensus disorder prediction 865 886 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01099 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1484.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01099 Cmo09g01035 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01099 Cmo-Chr1:9145484 Cmo14g00946 Cmo-Chr14:5027092 0 dispersed
Cmo01g01099 Cmo-Chr1:9145484 Cmo09g01035 Cmo-Chr9:5533200 2.23E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01099 Cmo_Chr01 FPKM 0.956373 1.877872 1.739691 1.25219 1.667954 1.616999 1.638677 1.034891 1.221959 1.184057