Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01101 ATGGGAAGGAGAAGAGAGCGGCGCCTGGCAGCTCTCAGTAACGCCGGCCGCCGTGTCAAACTCGATCTTTTCGCCGAGCCCTCCGGAGATTTAGATGGCTCTGATGTACAAGAAGAAGTTGGCGGGGATATAGATTCAAGAGAGACGACCAAGTTACCGAAATCAGCATCCTCTTCAGGCCACCAAGCACAAAATCCCTTGCTGTTACTTGAGCAATATAGTGACGATGAAGTTGATGAGGACTTGGATACAAATTCAGATCATGATGGGCAAGATGCTTTGTTACCTGACCGAACGGATGAGGTTTCTGCTGAGGGATGTGAGAAAATGGATGCAAAGGTCAGTGAAGATCTCATCGCTCAAACGGCGGTCCAAGAGGAATCAGAGCGGGATTCTGTTGAATTTTCTGAGAACCTAGAGAGCAAAGATGAAGGAAAAACTGATACTAATAACTTGGGATATTTAAGCAAGGAAACTGATTTGGTTCAAACGTCTGTACCGGCCTCCTCTGATGTACAAGTCGTAGGGGACGTTATTTCAGGATGGAGGATTGTTATGCATGAGGAGAGCCATAATTATTATTATTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTACCTGATGTTGTTTTGGCTCAGGCTCAGCCTACTCAATCGACCACTGATATTAAAACCTCTCCTACACAATTTCCAGAGAACGTTACAGTCTTTAAACACGAATATTGCTTAGCTAACGGTGGGAAGTTAGATTTGTTTTCAGCAGAAAGCACAGGTTACAAGAATGGTGCTCCAGTATGTGCAAGTCAGGGTTCTGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAATGATGTGAATATAGCAAAAGCTGGTTCCGAGATCTATGTTGATTACACGATGACTCATGAAGAATCGAAGTCTGGGTTGGATCTTCCTTCGCATCTTCTGAACTGGAGTGCTAGCTTGTTAGAGAGATTGAAATCATTACAAAAGTCTGGGGGTCATGATTGGACATCAGAGTACATACAGGAAACTCAGATAAGACTCGAAGATTTGAAGTCGCTGATGCCCTATAAGACATCTTTGCTACCATTCTGGGAACACTCAGCAAGGAAGCTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGCTGTATCGTCGCAATTGGATGAAGCCAAGGCTACGAACGTTGGGTCTGAAGTCGAGAGAGTGGCTTGTGGTGGTTATGCTTCGGAGCATTCTCATTTGCGTACTGTCATTGCAAATGGAGAGAATATTTCATCGTCTAATGCAATCGAACACTTTGGAAACACTACTGCTGTGATTGAGCAGGTAAGTGAAGTTGTAATTGACGAAATGGCTTCCAAGAGTGGTGTACATTCTGTGGAAGATGTTGACATGGAGGTAGATATGGAAGTTGAAGATGCGAGTTCTGCAGGTAACTTGATGGTGACTGGTACGTCCGATATGTCCGTTGTTAAGTCGTTTACTTCCTCTGAGCAACTGCTTCTGCCAGATCCACAAGCCCAGCCAAATCTTTCTTCTGGATATGAATCCATAGTGCCAGAGGATAGCTCTATGGTGCCACCACCACCAGATGAGGAATGGATCCCCCCACCACCACCTGATAATGAAGATATTCCTCCACCGCCACCTGATGAGCCAGCTGAACCATTTTATCCTATGCCTCCATCTTATACCCAACTTGGCCAGCCTCCTTGTTACACCGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTAAGTATTATACACATCCTGTCCCTGAAGCCATTCTTAGTGCAAACTTTTATGGACATCCAGAAGCATGTAACGTTGTTTTGGCTCAAGCACCATTCTACTATGAGGCAGTTCCCAATTCACATACTGATTCTTCTCCTGTAGTTGTAAATGGTGTCGTGCCTGAAAGTTACGGTATTCTTCAAGATGCAACAACCTGTCTTCCCGTCTTTAGCACCGCAGAGCCTTCTCAGTTGCATGTTGATGTCTCATCTGTGAGATTTGAGCCTTCTTCCTCTATTCAATGTAGATCTTCTGATATAGCGAATATGAATACTGCTTCTTCCACGGATGAAATTGACAAGGGACGAAAAGAGATCGCATCAGTCTCCTTCCGATCTACTTCGGGCTCACCAACTAATGATGTTCTGCCTACATCTAAAGCTGTTACTGATTCTTCGGCTGTTGCTAATACATCTACAGTCTCCAAGGTTCAACCAAAAGCTCCGCGCAGTAAAAAGCAGACCGTCACGGTTGCCCCCTCCTTGAGATCTAATAAGAAGGTTTCCAGTTTGCTGGACAAGTGGAAAGCCGCTAAGGAAGAACTTGAAGATGAGGAAGAACCCGAAAATGCGTACGAGATTTTAGAGAGGAAACGAGAACGGGACATAAAGGAATGGCATGCACAGCAGGTTTCCAGTGGGGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGGGGTGATTGGCGTGAGCGGGTAAAGCGAAGGAGAGCTCAATCGTCGAGCAAAGTTACTCAATCCCCAGCTGAAGCATCAGTGGATGGAAACCAGCAGCCTGACCTGGCAGAAATCTCAAAAGATCTCCCCTCAGGGTGGCAGGCATATTGGGACGAGTCTTCAAAGCAGATGTATTATGGTAAAGTTAAGACCTCGGAAACGTCGTGGACAAAGCCGAGCAAGTGA 2730 45.02 MGRRRERRLAALSNAGRRVKLDLFAEPSGDLDGSDVQEEVGGDIDSRETTKLPKSASSSGHQAQNPLLLLEQYSDDEVDEDLDTNSDHDGQDALLPDRTDEVSAEGCEKMDAKVSEDLIAQTAVQEESERDSVEFSENLESKDEGKTDTNNLGYLSKETDLVQTSVPASSDVQVVGDVISGWRIVMHEESHNYYYWNVETGETSWEVPDVVLAQAQPTQSTTDIKTSPTQFPENVTVFKHEYCLANGGKLDLFSAESTGYKNGAPVCASQGSEVDQSYAAFSTCSNDVNIAKAGSEIYVDYTMTHEESKSGLDLPSHLLNWSASLLERLKSLQKSGGHDWTSEYIQETQIRLEDLKSLMPYKTSLLPFWEHSARKLKQIEDDINKEIYQTAAVSSQLDEAKATNVGSEVERVACGGYASEHSHLRTVIANGENISSSNAIEHFGNTTAVIEQVSEVVIDEMASKSGVHSVEDVDMEVDMEVEDASSAGNLMVTGTSDMSVVKSFTSSEQLLLPDPQAQPNLSSGYESIVPEDSSMVPPPPDEEWIPPPPPDNEDIPPPPPDEPAEPFYPMPPSYTQLGQPPCYTEPYQVSYPDSSIKYYTHPVPEAILSANFYGHPEACNVVLAQAPFYYEAVPNSHTDSSPVVVNGVVPESYGILQDATTCLPVFSTAEPSQLHVDVSSVRFEPSSSIQCRSSDIANMNTASSTDEIDKGRKEIASVSFRSTSGSPTNDVLPTSKAVTDSSAVANTSTVSKVQPKAPRSKKQTVTVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKRERDIKEWHAQQVSSGDAKENANFQPLGGDWRERVKRRRAQSSSKVTQSPAEASVDGNQQPDLAEISKDLPSGWQAYWDESSKQMYYGKVKTSETSWTKPSK 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9167289 9174375 + CmoCh01G011010.1 Cmo01g01101 374584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01101 909 MobiDBLite consensus disorder prediction 849 863 - -
Cmo01g01101 909 MobiDBLite consensus disorder prediction 510 570 - -
Cmo01g01101 909 MobiDBLite consensus disorder prediction 51 69 - -
Cmo01g01101 909 SUPERFAMILY WW domain 874 907 IPR036020 GO:0005515
Cmo01g01101 909 MobiDBLite consensus disorder prediction 815 878 - -
Cmo01g01101 909 Gene3D - 871 909 - -
Cmo01g01101 909 CDD WW 878 907 IPR001202 GO:0005515
Cmo01g01101 909 ProSiteProfiles WW/rsp5/WWP domain profile. 176 210 IPR001202 GO:0005515
Cmo01g01101 909 MobiDBLite consensus disorder prediction 742 770 - -
Cmo01g01101 909 MobiDBLite consensus disorder prediction 25 105 - -
Cmo01g01101 909 MobiDBLite consensus disorder prediction 122 151 - -
Cmo01g01101 909 MobiDBLite consensus disorder prediction 87 105 - -
Cmo01g01101 909 SUPERFAMILY WW domain 169 208 IPR036020 GO:0005515
Cmo01g01101 909 MobiDBLite consensus disorder prediction 510 529 - -
Cmo01g01101 909 ProSitePatterns WW/rsp5/WWP domain signature. 182 208 IPR001202 GO:0005515
Cmo01g01101 909 PANTHER OS06G0298400 PROTEIN 1 909 - -
Cmo01g01101 909 Pfam WW domain 877 907 IPR001202 GO:0005515
Cmo01g01101 909 Pfam WW domain 180 208 IPR001202 GO:0005515
Cmo01g01101 909 MobiDBLite consensus disorder prediction 123 147 - -
Cmo01g01101 909 Gene3D - 178 218 - -
Cmo01g01101 909 ProSiteProfiles WW/rsp5/WWP domain profile. 875 909 IPR001202 GO:0005515
Cmo01g01101 909 SMART ww_5 876 909 IPR001202 GO:0005515
Cmo01g01101 909 SMART ww_5 177 210 IPR001202 GO:0005515
Cmo01g01101 909 Coils Coil 774 794 - -
Cmo01g01101 909 CDD WW 180 209 IPR001202 GO:0005515
Cmo01g01101 909 MobiDBLite consensus disorder prediction 533 570 - -
Cmo01g01101 909 ProSitePatterns WW/rsp5/WWP domain signature. 881 907 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01101 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1313.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01101 Cmo09g01031 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01101 Cmo-Chr1:9167289 Cmo09g01031 Cmo-Chr9:5503860 2.62E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01101 Cmo_Chr01 FPKM 7.627969 8.066706 1.478582 1.13349 0.0 1.372654 1.00417 0.095831 0.0 0.093294