Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01104 ATGATTCATTCTGGTTTCTTCCTTGCGGGTCCTTCATTTAATTCTGATGCTACTACATCTTTCATATCGAGTACTGTGTCTGGAGAAGATGGCGCTACGGCTGATGATACCAGAAATGATACCTCTGGTTCCCTCCCTCCTTCTTTTTGGGTTAGAACGGCCATGAGAGTCTCTAGAGCTAGATGGTTCATTTTCTTGAGAAGAGTTTTTCATTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCATGGATGGCGATGGAACTTGTAGCTTTGTTATTTCAACTAATCATCTCTGTGTTCACTCTTGCCATTTCACAAACTGAGAAGCCAGTTTGGCCTATGAGATTGTGGATAGCTGGTTATGATCTTGGCTGTGTTCTTAGCTTACTGCTTCTCTGCGGTCGCCATCGGTGTCGTTATCTTATGCAGGGAGATAGTAACAGTCTTTCGGATATCGAGCACCAGAGCAGCAATGAATCATCGAGGTACTCACATTTGATCAACAGATGTCGGACGTTTCTTGATCTTTTCTTTGCAATATGGTTCGTAATGGGCAATCTTTGGATCTTCGATTCTCGGTTTGCGTCGTTTCAAGGAGCTCCCAAGCTACATCTATTATGCAGCTTCGTGCTAGTTTGGAATGCCATATGCTACTCTTTCCCATTCTTCCTGTTTCTGCTGCTATGTTGCTGTGTGCCAGTGATCAGTAGTCTTATAGGATATAACATCAACATGGGATCAACCGAAAAAGGCGCATTGGACGATCAAATCTCTCAACTACCTTGCTGGAAATACAAAGTCGTCGACGTCAACATCAACCTCGGAATTCAACCCGATAATTCCAATACAGGACTCCCAAAAGAGGATCCAGAATGTTGCATCTGTCTTGCCAAGTATATAGACAAGGAAGACGTGAGACAGTTGCCTTGTTCTCATGTGTTCCATCTCAGGTGCGTAGATAAATGGCTTGCTATAGCATCATCATGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 1038 43.45 MIHSGFFLAGPSFNSDATTSFISSTVSGEDGATADDTRNDTSGSLPPSFWVRTAMRVSRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISVFTLAISQTEKPVWPMRLWIAGYDLGCVLSLLLLCGRHRCRYLMQGDSNSLSDIEHQSSNESSRYSHLINRCRTFLDLFFAIWFVMGNLWIFDSRFASFQGAPKLHLLCSFVLVWNAICYSFPFFLFLLLCCCVPVISSLIGYNINMGSTEKGALDDQISQLPCWKYKVVDVNINLGIQPDNSNTGLPKEDPECCICLAKYIDKEDVRQLPCSHVFHLRCVDKWLAIASSCPLCKQQLQR 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9185983 9189603 - CmoCh01G011040.1 Cmo01g01104 374587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01104 345 Pfam Ring finger domain 298 340 IPR001841 -
Cmo01g01104 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 344 IPR013083 -
Cmo01g01104 345 CDD RING-H2_RNF111_like 297 340 - -
Cmo01g01104 345 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 24 344 - -
Cmo01g01104 345 SMART ring_2 299 339 IPR001841 -
Cmo01g01104 345 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 344 - -
Cmo01g01104 345 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Cmo01g01104 345 SUPERFAMILY RING/U-box 294 343 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01104 Cmo09g01028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01104 Cmo-Chr1:9185983 Cmo09g01028 Cmo-Chr9:5496998 1.12E-176 dispersed
Cmo01g01104 Cmo-Chr1:9185983 Cmo09g01027 Cmo-Chr9:5491616 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01104 - - csv:101217150 595.504