Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01109 ATGCCTGCCGCCAAGTTCAACAAGAAGAAAGCTGTGAAACGAGACGACCCACAATCGAAAAGGAAGAAGAAGGACGAGCTCTTCACGCCCAAACGTGGAAAGAAAGAGGAGGAGAATGATTCTGACCTCTCTGATGCTCTGGATGAGGAAGAAGTAGAGGATGGAATGCTTGATGGTGATGAACAAGGATCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCCTTGGCTGATGATTTCTTCCATGGAAGTGACGAAGAGAATGTTTCTCGTTCTGTTTCTGGTTCGGATTCTGATGAATCTGACATCGAAGAGAAGTCGAGAGCTATTGATGAAGAAAGAGCGAGGGAAGAAAAAGATGCAGCAGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCATCCAAGGAGGAACTTGAAGAAGAGGCGCTTAGACCTCCTGACATTTCAAATTTACAAAGGCGGATAAGAGAAATCGTTCGAGTTCTTTCAAATTTCAAGGCTTTGAGGCAAGAGGGGGCGACCCGGAAGGATTATGTCGAACAACTTAAGAAAGATATTGGTTCATACTATGGTTATAACGAATTTCTTACTGGGGTTCTAGTTGAGTTGTTTCCCGTTGTCGAGCTAATGGAACTTATCGAAGCTTTTGAAAAGCCGAGACCAATATGTTTGCGGACCAACACCTTAAAGACAAGAAGGCGTGACCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGGTAAACTATCTACAAGGTGCAAGCTCCTTTCTTCCTGTTATGGCCCTTGCTCCTCGAGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCAGCACTCATGAAAAATAGTGGATTAGATGGTTGTTCCATGAGCAACAAAGAATTAACTAAAAATCTGTTTCCAAAGCCCAAAACGGGAATAATATTTGCTAATGAGATGAAAGTACCAAGATTGAAGTCACTTACTGCGAATTTACATCGAATGGGAGTGACAAATACTGTTGTCTGTAACTACGATGGGAAGGAGCTCCCGAAAGTGTTGGGGATGAATACGGCCGATAGAGTTCTATTAGATGCCCCTTGTAGTGGATCTGGAGTTATATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCCTTGAAGAAATCCAGAAATGTGCTCAGTTGCAGAAGCAACTTATACTTGCTGCAATCGACATGGTTGATGCAAATTCAAAATCCGGGGGTTACATTGTTTACTCCACGTGTTCCATAATGGTCGACGAGAATGAAGCAGTTGTTGACTATGCACTAAAGAAGAGGAATGTGAAACTTGTTCCATGTGGCCTTGATTTTGGACGTCCCGGGTTTATCCGGTTTAGGGAAAAACGTTTTCACCCATCTTTAGAGAAGACGAGACGTTTCTACCCCCATGTCCATAACATGGATGGCTTTTTTGTAGCAAAGGTATGTTTCAACCTTAAAAGATTGATGATATATGTTGAGCTCTCTCCTTTCCAGTTCCTGTTGAATGGGATTGGGTGGGATATTAGGGACTTGTGTTCTCGAATAATAGTTCGACGAAGGACCTTTGATTGTACTGAAGCATTGGAAGAAGAGGCAGTGGAAGAGGAGGATATTGAGACAGAGAAGAGTTCAAATGAGACGAACGATGGTGAATGCCTTCACCCGCAAGCGAACGATGGAAAAAAGAGGAAGAAGGTCGTTTCGGAAAAACACGAAGTTGAAAATGGCGAAGAATCGAAGCCGGGTGTGGAAAAGAGGAAGAAGAGAAAATTTCCCTCGAGAGAGGAAATCTCAAAAGCTAGGGAAGAAAAGCGACAAGCTTTGAGGGAAAAGAAAGCTGGTGGGAGCAAGAAATAA 2001 42.53 MPAAKFNKKKAVKRDDPQSKRKKKDELFTPKRGKKEEENDSDLSDALDEEEVEDGMLDGDEQGSGSEVSSDGDDPLADDFFHGSDEENVSRSVSGSDSDESDIEEKSRAIDEERAREEKDAADEMQLNIKEESDEFRLPSKEELEEEALRPPDISNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLVELFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMVNYLQGASSFLPVMALAPREKERIVDMAAAPGGKTTYIAALMKNSGLDGCSMSNKELTKNLFPKPKTGIIFANEMKVPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVISKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVDENEAVVDYALKKRNVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKVCFNLKRLMIYVELSPFQFLLNGIGWDIRDLCSRIIVRRRTFDCTEALEEEAVEEEDIETEKSSNETNDGECLHPQANDGKKRKKVVSEKHEVENGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSKK 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9208937 9214177 + CmoCh01G011090.1 Cmo01g01109 374592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01109 666 MobiDBLite consensus disorder prediction 603 666 - -
Cmo01g01109 666 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 218 532 IPR001678 GO:0008168
Cmo01g01109 666 Gene3D Sun protein; domain 3 218 286 - -
Cmo01g01109 666 Gene3D Vaccinia Virus protein VP39 290 534 IPR029063 -
Cmo01g01109 666 MobiDBLite consensus disorder prediction 8 41 - -
Cmo01g01109 666 PANTHER BNACNNG49010D PROTEIN 31 332 - -
Cmo01g01109 666 PANTHER BNACNNG49010D PROTEIN 351 617 - -
Cmo01g01109 666 MobiDBLite consensus disorder prediction 42 60 - -
Cmo01g01109 666 MobiDBLite consensus disorder prediction 97 124 - -
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase signature 514 531 IPR023267 GO:0001510
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase signature 454 470 IPR023267 GO:0001510
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase signature 400 412 IPR023267 GO:0001510
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase signature 310 320 IPR023267 GO:0001510
Cmo01g01109 666 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 192 528 IPR029063 -
Cmo01g01109 666 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 214 294 IPR031341 -
Cmo01g01109 666 MobiDBLite consensus disorder prediction 1 124 - -
Cmo01g01109 666 Coils Coil 115 135 - -
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 237 250 IPR023273 GO:0008168
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 181 201 IPR023273 GO:0008168
Cmo01g01109 666 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 214 226 IPR023273 GO:0008168
Cmo01g01109 666 Pfam 16S rRNA methyltransferase RsmB/F 351 529 IPR001678 GO:0008168
Cmo01g01109 666 Pfam 16S rRNA methyltransferase RsmB/F 298 331 IPR001678 GO:0008168
Cmo01g01109 666 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 31 332 IPR023267 GO:0001510
Cmo01g01109 666 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 351 617 IPR023267 GO:0001510
Cmo01g01109 666 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 230 529 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cmo01g01109 666 MobiDBLite consensus disorder prediction 580 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01109 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 948.347
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01109 Cmo09g01023 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01109 Cmo-Chr1:9208937 Cmo07g00559 Cmo-Chr7:2507717 2.61E-14 dispersed
Cmo01g01109 Cmo-Chr1:9208937 Cmo09g01023 Cmo-Chr9:5457883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01109 Cmo_Chr01 FPKM 0.382474 0.544802 0.294891 0.361846 0.328058 0.277192 0.401591 0.207931 0.25872 0.185274