Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01114 ATGGCCGCTTCAGAGCTCGAAGTTGCAGTGTTCATCGATACTGATTTCGGCACCCATCTGGCCGTCGCTGTTCCGCCGCACATCGCCGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAAGTGTTTCCCAAATATAGGAGAGATCAAGGTGGATGGATTCATGGTGAAGCAAAACTCGAACTTCTACCATTTGCCCGACACGTTGCTTACCAAGCTCACTTCCCGGGTGGAATCAGTGCAGTTTCTTCATGTCAAAGCACAGCCTTTGAATGAGTTTATCGAGCCTCGTTTACCCGAAAATGCCGATTGTTTCCCCAACCTAAACAATGGCGCCTATCCTTCGGAAAGACAAGGCTACTGTAGACACTCCTGCACGAGTAAAATCAGAATCGACGACAAGAAACGGACAAGAAAGATACTAAGATCAGTCAGCACCAAAAGCATCATCTTAGCTTGTAATACAAAGAGAAAAAGGAAGAGAACTCAGCGTTTAGAGCATGTGGAAAAGAACTCCGATCTGGAGGAACTGATCAAAGATGCAGAAAAGTTCGATGGCTCGATCGATACATCGTCGTACCATAATATGCCAAATGATGAGGTTAGAACCACAAAACAAAGGTATGCAAGCTCCTCCACAACCAGTGAGTTATCATCTGAAGTCATGTCTGTTTCAAGTATCATAAAAAGATATTTTCCAAGCCACGACGAAGTAAGCAGCGTTCCAAATCGATCGAGCGGTGGCATTACTCGTAGTGAGCCAGAGGAAAGAAGCCCAAGCTTGTTGCCTTCGAAATCGCCATTTAAAGCAGGTACACAAAAGCGTGAGAGATCATCTAAGCTTGGGAAAAGGCTTGTAATGGCTTCATATAACCTTGGGATTTCTCCCAACAGAGGAAGGCCAGAGATTTCACTCTGCAATTCCAGAGGTAAAAAGTTTCAAGAACTCATGTCTTTGGCTAAAAGTTCTTGTTTTGAGATAAGTGATAGAGAAGATTGA 1005 44.28 MAASELEVAVFIDTDFGTHLAVAVPPHIAAGALKREVERVHFKCFPNIGEIKVDGFMVKQNSNFYHLPDTLLTKLTSRVESVQFLHVKAQPLNEFIEPRLPENADCFPNLNNGAYPSERQGYCRHSCTSKIRIDDKKRTRKILRSVSTKSIILACNTKRKRKRTQRLEHVEKNSDLEELIKDAEKFDGSIDTSSYHNMPNDEVRTTKQRYASSSTTSELSSEVMSVSSIIKRYFPSHDEVSSVPNRSSGGITRSEPEERSPSLLPSKSPFKAGTQKRERSSKLGKRLVMASYNLGISPNRGRPEISLCNSRGKKFQELMSLAKSSCFEISDRED 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9232461 9235171 - CmoCh01G011140.1 Cmo01g01114 374597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01114 334 MobiDBLite consensus disorder prediction 240 261 - -
Cmo01g01114 334 MobiDBLite consensus disorder prediction 189 218 - -
Cmo01g01114 334 MobiDBLite consensus disorder prediction 237 283 - -
Cmo01g01114 334 MobiDBLite consensus disorder prediction 190 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01114 - - - csv:101220553 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01114 Cmo-Chr1:9232461 Cmo05g00066 Cmo-Chr5:240169 2.19E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g679 . . Bda07g00414 . . . . . . . Cma01g01071 . Car01g00947 . . . Cpe02g00827 Bhi09g01781 . . . . . . . . . . . . . Cone6ag0006 . . . Lsi02g01820 . . . . . . . Bpe11g00591 . . Bma14g00678 . Cmo01g01114 . . . . . . . . . . . . . . Cla09g02083 Cam09g2171 Cec09g2236 . . . . . . Chy01g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012285 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01114 Cmo_Chr01 FPKM 4.989899 8.492168 5.530474 4.593441 17.537163 18.910473 14.867267 0.0 0.0 0.0