Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01125 ATGGCCAGCAAAGAAGTGATAGAGCCGCTGTTACCAACGTCGTCTAATACTATTGGAACAAGAATATTAGATATTCCCAGTAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCGGATTCACCTCAATCAGAGACCACCGGCACAGGCACAGGCACAGGCGCCGGCGCAGACACTTGTCCAGTTCCACGTTCAGGATTAATTTTTGGAAATCTTGGTCCGAGTTTAAGAAGAGTAGCCTTAGTTTTAATACTATACATGGGTATAGGAACTCTATGTTTTTATCTTGTCAGGTACCAAATCAAAGGGGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGAGATCTTGTCCCAAGCAGTCCTTCAACAAAACTACTAGCTTGCGCTTTTGTCTTCTCGGGAATGGCCCTCGTTGGCCTAATACTAAGCAGTGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAGACATTGAATGCGCACCAAAACGGCCATTGTGACATGACAAAAGAAATTGATACTGATAAAGCCAGAAACAAGTGTATAGTGGTGTTTCTCTTGCTTATTTTGTTCATCATTTCTGGGACTGTCTTTCTTGTTAACATTGAGAAGTTGGGTTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACATTAGGCTATGGAGACAAAAGCTTCTCGACTAAGTCGGGGCGCATCTTCGCCATTTTCTGGATCTTGATAAGTACCATCACACTGGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAAGAAGGCAGAAGTCTCTGGTGAAGTGGGTTCTGAGTAAAAAGGTGACAAACTTGGATCTTGAGGCTGCGGATCTCGATAACGACAGGGTCGTCGGGGCTGCAGAATTTGTGATCCACAAGCTGAAAGAGATGGGGAAAATCACAGAAGATGACATTGCACCTGTGCTGAAGGAATTTGAGAAGCTTGATGTTGATCAGTCAGGAACGCTGTCCATATCTGATTTAACACTTGCTCAATCGTCTTAA 1080 42.87 MASKEVIEPLLPTSSNTIGTRILDIPSSKRRLRRTKSAPHADSPQSETTGTGTGTGAGADTCPVPRSGLIFGNLGPSLRRVALVLILYMGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPSSPSTKLLACAFVFSGMALVGLILSSAADYLVEKQEILLFKTLNAHQNGHCDMTKEIDTDKARNKCIVVFLLLILFIISGTVFLVNIEKLGFIDAFYCVCSTITTLGYGDKSFSTKSGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTNLDLEAADLDNDRVVGAAEFVIHKLKEMGKITEDDIAPVLKEFEKLDVDQSGTLSISDLTLAQSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9286483 9289732 - CmoCh01G011250.1 Cmo01g01125 374608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01125 359 SUPERFAMILY EF-hand 287 354 IPR011992 -
Cmo01g01125 359 MobiDBLite consensus disorder prediction 29 58 - -
Cmo01g01125 359 Pfam Ion channel 204 275 IPR013099 -
Cmo01g01125 359 Pfam Ion channel 84 164 IPR013099 -
Cmo01g01125 359 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Cmo01g01125 359 Gene3D - 77 173 - -
Cmo01g01125 359 PRINTS Two pore domain K+ channel signature 120 148 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo01g01125 359 PRINTS Two pore domain K+ channel signature 236 245 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo01g01125 359 Gene3D - 181 287 - -
Cmo01g01125 359 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 353 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo01g01125 359 SUPERFAMILY Voltage-gated potassium channels 194 294 - -
Cmo01g01125 359 SUPERFAMILY Voltage-gated potassium channels 78 175 - -
Cmo01g01125 359 MobiDBLite consensus disorder prediction 39 56 - -
Cmo01g01125 359 PANTHER TWO PORE POTASSIUM CHANNEL A 19 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01125 Cmo-Chr1:9286483 Cmo03g01373 Cmo-Chr3:10089701 1.56E-65 dispersed
Cmo18g00576 Cmo-Chr18:5464120 Cmo01g01125 Cmo-Chr1:9286483 1.08E-115 transposed
Cmo01g01125 Cmo-Chr1:9286483 Cmo09g01006 Cmo-Chr9:5354417 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01125 K05389 - csv:101216032 553.132