Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01129 ATGTTATGGCTACGACTGGTAGACATGAAATGCCTCAAAATGCTGCTGTTCATTACGATTTCTTGCGGTACGAGCGAATCCAAAAACTCCCGCCAACTCTCGATCAAGTTCTTCCACTTCGCCCTAGCCGCTTCGGGGTTCCGAAGATTTTTCTTCCGTGACATGAATGTGGGCGACCTTAACAAAGTTTGGGAGATTAAAGCCCTGAAGAAGGCTGGGGAGAAAGAAGCTAAGGAGATTCTGGAGAGAATTGCCAAACAAGTTCAACCTATTATGCGGAAACGCAAATGGCGAGTCAAGGTCCTTTCGGAATTCTGCCCAAAAAATCCAGCACTTTTAGGATTAAATGTGGGACGTGGAATTCATGTGAAGTTGAGGCTTCGAAGGCCAAATAGGGATGGAGATTTCTTCCCCTTCAATCAAGTTTTGGATACAATGTTACATGAGCTTTGCCACAATCTCATTAGTCCTCACAATGCCAGTTTCTACAAGCTTTGGGATGAACTTAGAAAGGAATGTGAGGAGTTGATGGCTAAGGGAATTAGTGGCTCAGCACAGGGATTTGAACTACCGGGGAGGCGTTTGGGTGGTAAATCTCAACAACCCCCTCTCTCTTCCCTCCGCAAATCTGCCTTAGCCGCTGCAGAAGGAAGAAAACGTTTGGGATCTCTACTTCCTTCTGGTCCTAATCGGCTTGGTGGTGATAGCAACATCATGGTTGCTCTAAGTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGGCTTCAGGATGATATTTGGTGTGCTTCATCTCAAGAAATGCCTGTAGATGAGGAATGTTGCTCTGATTTTCCATCAGACACGGTTCATTCCTCTCACGCAGAAACTAGCGCAATAGATTTCTCCTGTTCATCCTCTAATTCGATGCCAATTCACGATGGAACACTTCATCCTGAAGAACATTCCATGTGGGAGTGCGGGAATTGCACCTTACTGAATCCACCACTAGCTCCAATATGTGAGCTTTGTTTGTCACAAAAGTCGAAAGATGCTGATACCAAGTACAGATTCTGGTCATGTAAATTCTGCACTTTAGAAAACAGTGTGAAGTTGGAGAAATGCTTAGCTTGTGGTCAATGGAGATATTCTCATGGTCAGCCAGCGTCGACTCGAGGACCGAATCTTGGCACTTGA 1176 45.49 MLWLRLVDMKCLKMLLFITISCGTSESKNSRQLSIKFFHFALAASGFRRFFFRDMNVGDLNKVWEIKALKKAGEKEAKEILERIAKQVQPIMRKRKWRVKVLSEFCPKNPALLGLNVGRGIHVKLRLRRPNRDGDFFPFNQVLDTMLHELCHNLISPHNASFYKLWDELRKECEELMAKGISGSAQGFELPGRRLGGKSQQPPLSSLRKSALAAAEGRKRLGSLLPSGPNRLGGDSNIMVALSPVQAAAMAAERRLQDDIWCASSQEMPVDEECCSDFPSDTVHSSHAETSAIDFSCSSSNSMPIHDGTLHPEEHSMWECGNCTLLNPPLAPICELCLSQKSKDADTKYRFWSCKFCTLENSVKLEKCLACGQWRYSHGQPASTRGPNLGT 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9305283 9309445 + CmoCh01G011290.1 Cmo01g01129 374612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01129 391 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 286 391 - -
Cmo01g01129 391 ProSiteProfiles WLM domain profile. 54 257 IPR013536 -
Cmo01g01129 391 PANTHER ZINC ION BINDING PROTEIN 55 292 - -
Cmo01g01129 391 SUPERFAMILY Ran binding protein zinc finger-like 314 340 IPR036443 -
Cmo01g01129 391 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 55 292 - -
Cmo01g01129 391 ProSiteProfiles Zinc finger RanBP2 type profile. 348 377 IPR001876 -
Cmo01g01129 391 MobiDBLite consensus disorder prediction 192 211 - -
Cmo01g01129 391 Pfam WLM domain 62 257 IPR013536 -
Cmo01g01129 391 SMART zf_4 316 340 IPR001876 -
Cmo01g01129 391 SMART zf_4 350 374 IPR001876 -
Cmo01g01129 391 ProSitePatterns Zinc finger RanBP2-type signature. 352 371 IPR001876 -
Cmo01g01129 391 PANTHER ZINC ION BINDING PROTEIN 286 391 - -
Cmo01g01129 391 ProSitePatterns Zinc finger RanBP2-type signature. 318 337 IPR001876 -
Cmo01g01129 391 Gene3D - 312 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01129 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - vvi:100260002 476.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01129 Cmo09g00999 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01129 Cmo-Chr1:9305283 Cmo02g00053 Cmo-Chr2:287837 1.64E-10 dispersed
Cmo03g00097 Cmo-Chr3:1354046 Cmo01g01129 Cmo-Chr1:9305283 1.92E-130 transposed
Cmo09g00999 Cmo-Chr9:5313329 Cmo01g01129 Cmo-Chr1:9305283 9.38E-144 transposed
Cmo01g01129 Cmo-Chr1:9305283 Cmo09g00998 Cmo-Chr9:5310102 8.10E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01129 Cmo_Chr01 FPKM 121.049683 136.797836 253.5746 237.275894 18.461103 25.494259 18.798935 444.020966 479.44931 433.879547