Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01134 ATGGCGCTCCAGTCTTCGATTTTGGGTCCGCCCGCCTTCTCTATCCGCACGAAACCCTTTTCTCTTCTGCATTGCTATCGATATAAGGCTGTACCAGTAAGGATTTTTCGGAGTAATAATCGGTACCCTAGTCTTTATTCGTCGAATTGCGTTCAATTTCGTAGTTCTGGAAGCATTTGGTGTACAGTTTATGAAGAAACTGATGCGTTTGCAAATGGAGCTCGTTTGGGATGTGGGGTTAGTGCGAACTCGAACTGTTCAAGTGTTCCTGAGCCGAATCGAGATTTTGTTAGAGAAATTGCTAAGCGTGGGGTTATTTTCACTGCAATTGTGTATGGTGTGCTCGTTGTTGGCTGTAAAAATGTATTGGCAACTGAGGGTGTGGTTAGTTTTGGCAGGGATGTTGTTGGGCAGGGGATATTGACGTTTAGAAATGCGTGGCCAAAAGCGTTGTTGGTCCTTAAGATTTTCAAGGAGCAGGGTTTGATTTTGGCTTTGCTTTTAGGACTCTCTGCGTTTTTCTCTATGGCTGAGACTTCAATAACCACACTATGGCCTTGGAAGGTACGTGAATTGGCTGAAAAGGAACCTGAAGATGGTGTCTTCAAAATGCTTCGTACTGACGTTACAAGATTTCTCACGACCATACTTATTGGCACAACTGTGGTAAATATTGGGGCAACTGCGTTAGTCACAGAGGCCGCAACTGCAATATTTGGGGAAGCTGGTGTTAGTGCAGCAACTGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAACTCACTCCAAAAAGTATTGCCGTGCATAATGCTACCGAGGTTGCTAGAATTGTGGTCAGGCCAGTGGCATGGCTTTCGATTATACTTTACCCAGTTGGAAGAATTGTCACCTATCTATCAATGGGGATGCTTAAAATAATTGGTATGAAAGGGAGTAGTGAACCATTTGTAACTGAGGAGGAACTAAAATTGATGTTGCGAGGGGCAGAACTGAGTGGAGCCATAGAGGAGGAAGAGCAGGATATGATTGAGAATGTTCTTGAGATAAAAGATACACATGTTAGAGAGGTGATGACACCTCTTATCGACGTGGTTGCAATAGATGGAAGTGCCACACTCGTTGACTTCCACAAATTGTGGGTGACTCATCAGTACTCAAGGGTACCTGTTTTTGAGCAGCGCATAGATAACATTGTTGGGATTGCATATGCAATGGATTTGCTGGATTTTGTACAGAAGGGTGAAGTACTAGAGAGCACTACTGCCGGGGATATGGCCCACAAACCTGCTTACTTCGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCCGAGAGTTTCGTATCCGGAAAGTTCACATGGCTGTTGTGCTTAACGAATATGGCGGCACAGTTGGAATTGTAACACTGGAAGATGTGGTTGAGGAAATTGTAGGTGAAATCTTTGACGAAAATGATTCAAAGGAGGAGATCCAGAAGAAAACTGGCTACATTGTGATGCGAGCCGATGGAGTATATGATGTCGATGCTAATACCGCAATCGATCAGCTCTCTGAAGATCTAAATATCAAAATGCCAGAGGGTCATCAATACGAAACGGTGTCGGGTTTTGTTTGTGAGGCTTTTGGATATATCCCAAGGACGGGTGAAAGCGTTAAAGTGGTCCTTGAAAAGGAAGACGAAGAAGCAGAAGAGTCAAATTCCGAAAACAAAAATCAGAAGCAAAAACGCCTAATCTTCAATATCGAGATATTAGCAGGAAATGCTAGAAAGGTTAGTGCTGTTCGGTTTGAACGGGTGAATGACGATAAAGGTGAGGTGGCTCATCTTGTCCCTAAAGTCATGGAGAAGAAATGGAGCAGTAATGGGGAGTCTGGTAGTGTAGAAAATGATAATATATTATCAGAGAGACTTGATGACAGCCTCTCTAGATTGCACCAAAACGATGATGATCATAGCAGTGATAGAAATTAG 1971 43.43 MALQSSILGPPAFSIRTKPFSLLHCYRYKAVPVRIFRSNNRYPSLYSSNCVQFRSSGSIWCTVYEETDAFANGARLGCGVSANSNCSSVPEPNRDFVREIAKRGVIFTAIVYGVLVVGCKNVLATEGVVSFGRDVVGQGILTFRNAWPKALLVLKIFKEQGLILALLLGLSAFFSMAETSITTLWPWKVRELAEKEPEDGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARIVVRPVAWLSIILYPVGRIVTYLSMGMLKIIGMKGSSEPFVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHKLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDFVQKGEVLESTTAGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRADGVYDVDANTAIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESVKVVLEKEDEEAEESNSENKNQKQKRLIFNIEILAGNARKVSAVRFERVNDDKGEVAHLVPKVMEKKWSSNGESGSVENDNILSERLDDSLSRLHQNDDDHSSDRN 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9338401 9349989 - CmoCh01G011340.1 Cmo01g01134 374617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01134 656 MobiDBLite consensus disorder prediction 632 656 - -
Cmo01g01134 656 ProSiteProfiles CBS domain profile. 425 483 IPR000644 -
Cmo01g01134 656 Pfam Transporter associated domain 499 599 IPR005170 -
Cmo01g01134 656 SMART CorC_HlyC_2 498 600 IPR005170 -
Cmo01g01134 656 Coils Coil 555 577 - -
Cmo01g01134 656 SUPERFAMILY FAD-binding/transporter-associated domain-like 496 603 IPR036318 GO:0050660
Cmo01g01134 656 SUPERFAMILY CBS-domain pair 341 480 IPR046342 -
Cmo01g01134 656 MobiDBLite consensus disorder prediction 617 656 - -
Cmo01g01134 656 Gene3D - 495 594 IPR016169 -
Cmo01g01134 656 ProSiteProfiles CBS domain profile. 358 419 IPR000644 -
Cmo01g01134 656 CDD CBS_pair_CorC_HlyC_assoc 353 474 IPR044751 -
Cmo01g01134 656 PANTHER BNAC03G73630D PROTEIN 1 648 - -
Cmo01g01134 656 Gene3D - 333 488 IPR046342 -
Cmo01g01134 656 ProSiteProfiles CNNM transmembrane domain profile. 153 339 IPR002550 -
Cmo01g01134 656 PANTHER HEMOLYSIN-RELATED 1 648 - -
Cmo01g01134 656 Pfam CBS domain 354 412 IPR000644 -
Cmo01g01134 656 Pfam CBS domain 423 477 IPR000644 -
Cmo01g01134 656 Pfam Cyclin M transmembrane N-terminal domain 162 339 IPR002550 -
Cmo01g01134 656 SMART cbs_1 429 477 IPR000644 -
Cmo01g01134 656 SMART cbs_1 363 412 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01134 - - - bhj:120084424 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01134 Cmo-Chr1:9338401 Cmo09g00994 Cmo-Chr9:5275148 0 dispersed
Cmo01g01134 Cmo-Chr1:9338401 Cmo07g00633 Cmo-Chr7:2860815 1.93E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01134 Cmo_Chr01 FPKM 8.029677 9.730446 39.680782 35.006046 9.935707 11.677611 9.008567 37.512081 37.262802 39.149818