Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g01145 | ATGCCAGAGAAAGACAGTCAATGTGTTGCTAAACAGCCTCGTCTTGTGGCTAGAAAGTTTCTGGCTAGGCCTCAACATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGATTTGAGCTGAAATACTTCGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCTGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATTGGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGTATTGTACATTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGCCTCCAACTATGGATCAACCTTTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGAAATCCCAGAAGCTACAAAAGATGGAGTGACAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCCACACAAGAACACCAACAATGTACTTAGACTTCACTCTCAACCCAAAGGCTCATCTCCATCAGCCAATCCCGTCGTCCTGGAACGCGTTCGTTTACATTCTCGAGGGCGAGGGCGTCTTCGGCAGTTCGAAGGCGACGTCGACGACAGCACATAACCTTCTTCTGCTCGGGTTCGGGGACGGTTTAGACGTGTGGAATAAGTCATCCAAGGCTGTAAGGTTCATCTTGGTAGGAGGTGAACGACTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAACAAATTGACCAAACCATTGATGATTTTGATAACTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCACAAGCTGCAATTTCATAG | 897 | 46.15 | MPEKDSQCVAKQPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKEIPEATKDGVTVKVIAGEALGAKSPIHTRTPTMYLDFTLNPKAHLHQPIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLDVWNKSSKAVRFILVGGERLSEPVVQFGPFVMNTQEQIDQTIDDFDNYTNGFEKARHWRSQAAIS | 298 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9388579 | 9393398 | - | CmoCh01G011450.1 | Cmo01g01145 | 374628 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g01145 | 298 | CDD | cupin_pirin_N | 31 | 128 | - | - | |
| Cmo01g01145 | 298 | CDD | cupin_pirin_C | 176 | 251 | - | - | |
| Cmo01g01145 | 298 | Gene3D | Jelly Rolls | 27 | 279 | IPR014710 | - | |
| Cmo01g01145 | 298 | PANTHER | OS09G0484800 PROTEIN | 6 | 297 | - | - | |
| Cmo01g01145 | 298 | Gene3D | Jelly Rolls | 148 | 253 | IPR014710 | - | |
| Cmo01g01145 | 298 | PIRSF | Pirin | 12 | 292 | IPR012093 | - | |
| Cmo01g01145 | 298 | Pfam | Pirin | 34 | 126 | IPR003829 | - | |
| Cmo01g01145 | 298 | SUPERFAMILY | RmlC-like cupins | 14 | 293 | IPR011051 | - | |
| Cmo01g01145 | 298 | Pfam | Pirin C-terminal cupin domain | 179 | 283 | IPR008778 | - | |
| Cmo01g01145 | 298 | PANTHER | PIRIN-RELATED | 6 | 297 | IPR012093 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g01145 | Cmo16g00975 | CCT | |
| Cmo01g01145 | Cmo09g00982 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01145 | Cmo-Chr1:9388579 | Cmo16g00975 | Cmo-Chr16:6636999 | 4.30E-167 | dispersed | |
| Cmo01g01145 | Cmo-Chr1:9388579 | Cmo09g00982 | Cmo-Chr9:5209836 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g01145 | K06911 | - | csv:101216351 | 551.206 |