Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01147 ATGGGAGTGCTCGACACTGTCAAGAACATCGGCAGCGACCACGCCCCGGTCGTCCCCTTGACGTTGTTCGTTGCTGTTCTCTGTTTATGCTTGGTTATTGGCCATTTGCTCGAAGAAAATCGTTGGGTTAATGAATCCATCACTGCCATTATCATTGGAGGTGTTACTGGCACAATCATATTGGTCTGTAGCAAGGGAAAAGATTCTCATATCCTAACTTTTAATGAGGAAGTGTTCTTCATATATCTCCTTCCCCCAATAATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCACAACTTCTTGACCATTATGCTGTTCGGGGTGATTGGTGTTTTTATATCTGCACTCATTATAACGTCTGGTAGCCAGTGGTTGTTTCCAAGGATGGGCTTCCATGGTCTGTCCGCACGGGACTATATTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACTCTGCAGGTACTACACCAAGAGGAAACGCCTTTACTCTACAGTCTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAGAAGATTGACATCACTAGGCTTAACAGCAAGACAGCCCTTCATGTGTTCGGAGATTTTTGTTACTTATTTTCAACTAGCACCGTCCTTGGAGTGACCGCTGGGCTTCTAACAGCATATATCCTGAAAACCTTATACTTCGGGAGGCATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTTTCATACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACTGATAGTTCAAAGATAACCACCAGGCATGTATTTTCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTACGTGGGCATGGATGCTCTTGACATAGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGGTTGGTACATATAGCATAACAGTTTTCTTGATATTGCTTGGTCGTGCGGCCTTTGTATTTCCCCTATCTGCCATATCGAATTACTTCAATAAGCGTGAAGATAGATCATCATCGTCCTCTATAATCACATTTAAACAACAGATCATAATATGGTGGGCTGGACTGATGAGAGGAGCTGTATCTATTGCTCTGGCTTTCAAACAGTTCACCTATTCTGGGGTCACACGGGATCCAACCCACGCAACAATGATTACCATCACCACGGTTGTGGTGCTCTTCACTACGGTGGTATTTGGGTTTCTAACAAAGCCCCTCATAAGATGTCTGCTTCCACTCAACCAAGCAACTAACAGTGCAAGCAACTCCGGTCCGAAGTTCACCGAAGAGGACATAACTCTCCCTTTGCTTTCCATGGAAGAGTCTGCTGCAACCAATGTCCTCCGTGCAAAGGATAGTTTGTCAATGTTAATGGAGAGACCGGTGTACACCATACATTTCTTTTGGAGGAAATTCGATGATTACTACATGAGACCTATATTTGGAGGGCCTCGCCGCAGCAACCAACCTAGTGGTTCTGGTTGTTAG 1590 43.65 MGVLDTVKNIGSDHAPVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGVTGTIILVCSKGKDSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISALIITSGSQWLFPRMGFHGLSARDYIAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNSKTALHVFGDFCYLFSTSTVLGVTAGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDSSKITTRHVFSMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLVGTYSITVFLILLGRAAFVFPLSAISNYFNKREDRSSSSSIITFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTRDPTHATMITITTVVVLFTTVVFGFLTKPLIRCLLPLNQATNSASNSGPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLMERPVYTIHFFWRKFDDYYMRPIFGGPRRSNQPSGSGC 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9406608 9416026 + CmoCh01G011470.1 Cmo01g01147 374630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01147 529 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo01g01147 529 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo01g01147 529 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo01g01147 529 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo01g01147 529 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 20 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo01g01147 529 Gene3D - 139 191 - -
Cmo01g01147 529 Pfam Sodium/hydrogen exchanger family 23 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo01g01147 529 PANTHER SODIUM/HYDROGEN EXCHANGER 9 525 - -
Cmo01g01147 529 PANTHER SODIUM/HYDROGEN EXCHANGER 9 525 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01147 Cmo-Chr1:9406608 Cmo11g01307 Cmo-Chr11:8965531 0 dispersed
Cmo01g01147 Cmo-Chr1:9406608 Cmo17g01105 Cmo-Chr17:9077906 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01147 - - csv:101217775 931.784