Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01151 ATGGCGTCTTCGGAAGACGAGGCGGAGGCCTTGCCACTGTGTGTTTCAAATTATCACTTCGTGGATCATAAGGAAGAACCTGTTTCATTCTCCATTTTGCCGATTATGTGGGATGAAGTGGACAGATTGGATGGCGGCCAAGAACCTGTTTTCCTGCATGGAACAGCTGATGATGGACTTCAAAAGGTTTATAAACAGGTAACTGCATGGAGGTTTGATATTTGTGGTGCAAATCCAGAGATATCGGTGCTTTCCAAAGAAAACGTGTGGATTAAGCTTCAGAAGCCTAGAAAGAGCTTTGAGGATACCATTAGAACCATCTTGATTACAGTACAATGCCTTCATGTTTTAAAGAAAGATCCGGACACACCTAGCAAATCTTTGTGGGATCAATTAGCCAAAATCTTCAGCTTGTATGAGGTGAGGCCTTCACAAAATGATTTGGTGGATCACATGTCTCTAATCAGTGAAACTGTCGAAAGGGATGATCAATTGGCGAAGTCCCAGTTCTTACTTGCATTCCTTGAAGAGAAGCCCATTAAGAAAAGGTCATGTCACGAGGATGTTCAATGTACAGCGAGGCCTAGTTTTATAGTTGATGATTTAGATGATGAGGACATGGTTGATGATGCTATTGAAGAGGAGAGTGATGATGACGTTTTTGACTCCGTCTGTGCATTTTGTGATAATGGTGGTAACCTTCTATGCTGTGATGGGAGGTGCATGAGGTCCTTTCATGCAACTGAAGAGAATGATGATGAATGTTTGTCACTTGGTCTCTCGAAAGAAGAAGTAGATGCAATTGAAAACTATTTTTGCAAGAATTGCGAGTATAAACAGCACCAATGTTATGCTTGCGGGAATTTAGGTTCATCTGATAAAGCTTCTGGTGCTGAGGTATTCCAATGTGTAAATGCAACTTGTGGTCATTTTTATCATCCTAAATGTGTTTCAAAATTGCTTCATCGTGAAAATAAAATTGCTGCTGAGGAACTTGAGAGGAAGATTGCTTCTGGAGAATCTTTTTCTTGCCCTGTGCATAAGTGTTCTGTTTGTGAACTTGGTGAAAATAAGAAAGTACACGAATTACAGTTTGCTGTTTGCCGTCGTTGCCCAAAATCCTATCACAGAAAATGCTTACCAAGGAAGATCACTTTTGAAGATTCAGACGATGATGAAACCACAACCAGGGCATGGGAAGGGCTATTACCTAATCGCATATTGATATATTGCTTAGACCATGATATCGATGAGGACATTGGGACACCAGACAGGGACCATATTAAATTCCCTGGACTTGAAAAGAGTAAAATTCCCATCCAGCAAAAGAAAATTCCTACAGTTGATACAAGAAAAGGGAAAACAATAGATTTTCGTGGGATTAGGGAAAGAGTTGTATCAAAAAAGGAAAATATGTCAGATGACCATTTTCAGGGAAAATCTGTTGCAAAAGTATCGAAATCATTTGAAAGGTCCTCATCTGAAGGGAAGGTTCTTAGCAAAGAAGCTGAGAAATCATTGTTGGGCTCTGAGTCTAGAAAAGTGAAATTAGGTAATGTTTCAAGAAAGTCTTTGAATCAAAATACAGAATCTGTCCGCATGGACATTGATAAGACTATCAAAGGGAAAAAATCCTCAGTTGTAAAGGCTGCCGCATCAACCAAGAGGTCTGATCAAAATAAGGCTTCCAAGGAGGATAACAGTGAACTGGGCAAGTCTGACGCCTCTAAGCCTCTGACAAAGAAGTTGAACAGTGGGATGGTTCAATTAGATGCCGATACGGAGAGGAGGCTAATGGATTTAATGAAAAATGTTGCATCTTCAATTACTTTAGAGGACGTAGTTCAGAAACACAAAGTACCATCTACTCATGCATACTCTTTAAAAAATGTTGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAGCTGCTTTACGCAAGCTTGAGGAAGGATGTAGCATTGAGGAAGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTTATCACATATTTAAGTGGAAGAACAAACTGAGAGTATATCTTGCACCGTTTCTTTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACGAAAGTTGAGAAACTTCAGGAGATTGTCGATAGGCTTCATTGGTATATACAGAAAGGCGATACAATAGTGGATTTCTGCTGCGGTGCTAATGATTTTAGCATTTTAATGAAGAAAAAACTTGATGAGACGGGTAAACCATGCTCGTATAGAAACTTTGACTTTATTCCACCGAAGAATGTTTTCAATTTTGAGAGAAGGGATTGGATGACTGTGCAACCCAAGGAATTGCCTAAAGGATCTCAGTTGATCATGGGGCTAAATCCTCCATTTGGAGTTAAAGCTGCTTTGGCAAACAAGTTCGTTGATAAGGCTCTAGAGTTTAAGCCAAAGCTCGTTATTCTTATTGTTCCTCCTGAAACCGAGAGGTTGGATAAAAAAAAGACTCCTTATGACCTGGTTTGGGAGGATAATGAGTTTTTGTCAGGAAAGTCATTTTATCTTCCTGGATCTGTCAATGCAAAAGATAAACAGATGGATCAGTGGAATGTCAGGCCACCTGTGCTCTATTTGTGGAGTCGTCGTGACTGGGCCGATAAACACAAAGCCATAGCACAAGAGCACGACCATCTCCGTCCCCGGAAACAAGAGGAATCAGAAAAAGAGAAGACTTCTGATACCTCAAGGGTGAGGCAACCAGAGGAATCAGAAAAGGGAAAGAGTTCTGATTTGTCTAGGCTAAGGCAAAAAGAGGATTCAGGAATGGGATTAGGATCTGAAACCTCAAGGCCAAATCAATCGGAGTCGGAAAAGGGCCGAAGCTCTAAAACTTCTGATGATCATATTCATCTCAATGATACATTCCTGTTGGAATCTGTAATGCCAGCAGATGAACCAGAAGATTCCAAGAGTGGATCAGTCTCCTGTGACGTTCATAAAAACGGGTCTGTGAAAGGATCAAAGAGGGATAACGACAGAGAGAGTCATGACAGTCGAGACCGCCGCACTAATCTGTCTCCTGAGGCTCCAAGAAAGAGGCAGCGTTTTGAAGAAATACCTAGAAGAGGTGATGGTGAGACATCAGAAGAGAGCCGACGTGATGGTAAAAGGCCTTCTCCAAATGTGAGTGATCGTAGATCCTCGTTGGCTGGTTTATTGTCCAGTTCTGAGGTGGGAGGGATTGGACATCAGCAGTCGGGGTCGACTAAGCCTGGTTTCGATGCTAACTTCCAAGCTGCTAATGATGCAGCAGCACGAACTAGCATAATTAACGACGTTGCTCGATATGCTGCTGTGGGAGGAATTGGACATCAGCAGTCGGGGTCGACTATGCCTGGCCAGAATGCTAACTTCCAAGCTGCTAATGAAGCAGCACGAACTAGCACAACTAACGACATTGCTCGATATGCTGCTGTGGGAGGGATTGGACATCAGCAGTTGGGGTCGACTATGCCTGGCCAGAATGCCAACTTCAGAGCTGCTTATGATGCAGCACGGACCAGCTCGACGGATGCCATTGCGAGAAAGTACAACCAGGAGCCTCATCCAATTGGGACAAGTGGATGGTCAAACAATGCAAGCCTCAGTTCCGAAATTGGGTCTAGACAATTCGAGGACCGTATCATCGATCAAATGGGACGACATGCTGATGGCCTTAATTATGCACCCTACACTACAGGGCACAACGCATACATGAGGGACTTGGAAATACGATCACAACTTCGTCGTTACGGGCATATGGATACCGACAATTTAAGAAGCAATTATCAAGCTGGACCTGAATCTGGGTATAACAACAGGATTGGGTCATTCCCACCTACTTATGGGCATCTGGGTACGCCCTCTGAACCATCTCACTGGATGAACACTTCAGCGACGCAACGATACATGCCTCGACTGGATGAGTTGAACCACACCAGATTGGCAGGAATGGGTGCTGGGCATCAGATGAATGGCAGTGGCACTATCGACCCGAGATCTCACCTGCCCCCTGGTTTCAGGGGTGCGCCACAGGGGTTCGCTTCTGGTCCTCAGTACCCATATTCAAACCAGAATTCAGCTGGCTGGCTTAACGAGTAG 4128 43.44 MASSEDEAEALPLCVSNYHFVDHKEEPVSFSILPIMWDEVDRLDGGQEPVFLHGTADDGLQKVYKQVTAWRFDICGANPEISVLSKENVWIKLQKPRKSFEDTIRTILITVQCLHVLKKDPDTPSKSLWDQLAKIFSLYEVRPSQNDLVDHMSLISETVERDDQLAKSQFLLAFLEEKPIKKRSCHEDVQCTARPSFIVDDLDDEDMVDDAIEEESDDDVFDSVCAFCDNGGNLLCCDGRCMRSFHATEENDDECLSLGLSKEEVDAIENYFCKNCEYKQHQCYACGNLGSSDKASGAEVFQCVNATCGHFYHPKCVSKLLHRENKIAAEELERKIASGESFSCPVHKCSVCELGENKKVHELQFAVCRRCPKSYHRKCLPRKITFEDSDDDETTTRAWEGLLPNRILIYCLDHDIDEDIGTPDRDHIKFPGLEKSKIPIQQKKIPTVDTRKGKTIDFRGIRERVVSKKENMSDDHFQGKSVAKVSKSFERSSSEGKVLSKEAEKSLLGSESRKVKLGNVSRKSLNQNTESVRMDIDKTIKGKKSSVVKAAASTKRSDQNKASKEDNSELGKSDASKPLTKKLNSGMVQLDADTERRLMDLMKNVASSITLEDVVQKHKVPSTHAYSLKNVVDKTIKMGKLEGSVEAVRAALRKLEEGCSIEEAEAVCEPEVLYHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLQEIVDRLHWYIQKGDTIVDFCCGANDFSILMKKKLDETGKPCSYRNFDFIPPKNVFNFERRDWMTVQPKELPKGSQLIMGLNPPFGVKAALANKFVDKALEFKPKLVILIVPPETERLDKKKTPYDLVWEDNEFLSGKSFYLPGSVNAKDKQMDQWNVRPPVLYLWSRRDWADKHKAIAQEHDHLRPRKQEESEKEKTSDTSRVRQPEESEKGKSSDLSRLRQKEDSGMGLGSETSRPNQSESEKGRSSKTSDDHIHLNDTFLLESVMPADEPEDSKSGSVSCDVHKNGSVKGSKRDNDRESHDSRDRRTNLSPEAPRKRQRFEEIPRRGDGETSEESRRDGKRPSPNVSDRRSSLAGLLSSSEVGGIGHQQSGSTKPGFDANFQAANDAAARTSIINDVARYAAVGGIGHQQSGSTMPGQNANFQAANEAARTSTTNDIARYAAVGGIGHQQLGSTMPGQNANFRAAYDAARTSSTDAIARKYNQEPHPIGTSGWSNNASLSSEIGSRQFEDRIIDQMGRHADGLNYAPYTTGHNAYMRDLEIRSQLRRYGHMDTDNLRSNYQAGPESGYNNRIGSFPPTYGHLGTPSEPSHWMNTSATQRYMPRLDELNHTRLAGMGAGHQMNGSGTIDPRSHLPPGFRGAPQGFASGPQYPYSNQNSAGWLNE 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9426876 9445040 + CmoCh01G011510.1 Cmo01g01151 374634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 1359 1375 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 558 576 - -
Cmo01g01151 1375 SMART PHD_3 282 348 IPR001965 -
Cmo01g01151 1375 SMART PHD_3 349 415 IPR001965 -
Cmo01g01151 1375 SMART PHD_3 224 277 IPR001965 -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 949 965 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 979 1090 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 1333 1375 - -
Cmo01g01151 1375 SUPERFAMILY FYVE/PHD zinc finger 209 280 IPR011011 -
Cmo01g01151 1375 CDD PHD2_NSD 282 347 - -
Cmo01g01151 1375 CDD PHD3_NSD 349 381 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 889 965 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 889 933 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 486 505 - -
Cmo01g01151 1375 Pfam Cytosine specific DNA methyltransferase replication foci domain 16 136 IPR022702 -
Cmo01g01151 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 397 IPR013083 -
Cmo01g01151 1375 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1370 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 490 505 - -
Cmo01g01151 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 279 IPR013083 -
Cmo01g01151 1375 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1370 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 543 586 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 1058 1090 - -
Cmo01g01151 1375 MobiDBLite consensus disorder prediction 998 1057 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01151 - - - cmos:111445988 2719.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01151 Cmo_Chr01 FPKM 10.292509 11.646123 10.490899 11.90361 6.424218 6.770992 6.139625 12.576177 12.619472 13.105295