Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01156 ATGGCGTATACTTTGGAGTCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGAGATCAATGGCATGATTTCTGAGAGAAATTCACTTGCTGCGTCTGGCCCGGAAGCTCAACGTCACGCTTCGGCCATTCGCAGGAAGATCACGATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAACCGGCGCAGGGATATGATAGCAAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCGAACTTTGCGAACCGTGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTTATGAACAGAACAGCAGGCTTGGACAACCAGGGCCTAGTTGGTTTTCAACGACAAATCATGAGAGAGCAAGATGAAGGTCTCGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTACCCTTCACACGAGACTTATTGATGATTTAGATGAACATGTTGATGTTACAGATTCACGATTACGGCGAGTTCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCGGTTGTCGGGATCGTCGTTCTTGTTGCTGTTATATGGCTACTCATCAAGTATTTGTAA 702 43.87 MAYTLESWTKEYNEALKLSEEINGMISERNSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASALNMSNFANRDSLLGPEIKPADVMNRTAGLDNQGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLVAVIWLLIKYL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9455895 9458933 - CmoCh01G011560.1 Cmo01g01156 374639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01156 233 SMART tSNARE_6 132 199 IPR000727 -
Cmo01g01156 233 CDD SNARE_Qc 140 197 - -
Cmo01g01156 233 Pfam SNARE domain 174 224 IPR000727 -
Cmo01g01156 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Cmo01g01156 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 6 228 - -
Cmo01g01156 233 Gene3D - 139 201 - -
Cmo01g01156 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Cmo01g01156 233 PANTHER SYNTAXIN 6 228 IPR045242 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01156 Cmo16g00959 CCT
Cmo01g01156 Cmo09g00974 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01156 Cmo-Chr1:9455895 Cmo17g00043 Cmo-Chr17:213771 7.13E-09 dispersed
Cmo16g00959 Cmo-Chr16:6354364 Cmo01g01156 Cmo-Chr1:9455895 3.07E-95 transposed
Cmo01g01156 Cmo-Chr1:9455895 Cmo09g00974 Cmo-Chr9:5158698 2.78E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01156 K08503 - csv:101208669 408.683