Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01163 ATGTTGAGTATTAAGCGCGTTCCTACTGTGGTATCTAATTACCAAAAGGACGAGGCCGAGGAAGTCTCTCGCAGAGGTGGGTGCGGCCGGAACTGTCTCAATAAGTGTTGCATTGAAGGAGCCAAGATTCCATTGTATGCTTTCAAGGAGCTTAACAAGATAGCTTGTTCAAAAGGTTTGTGCTGCCAATATGAGAACAGTGTTCCTCCTGTTGCTTTTCTTGACTCACTGCTTCTTGGGGAGTGGGAGGATCGGATGCAGCGTGGGCTTTTTCGCTACGACGTCACTGCTTGTGAAACGAAGGTGATTCCTGGGAAGTATGGTTTCATTGCGCAGTTGAACGAGGGGCGCCATCTGAAGAAGAGGCCAACTGAGTTTCGAGTCGATAAGGTTCTCCAGCCCTTTGATGGTAACAAATTCAACTTCACGAAGGTTGGGCAAGAAGAGGTCCTGTTTCGGTTTGAACCAAATGAAAATGGTGGTGATACAGAGTTTATTCCAAATGCCCCGGTCGATGTCGAAAATTCTCCAAGCGTGGTTGCCATTAATGTCAGTCCTATTGAATATGGACATGTTCTCTTGATCCCGCGTGTTCTTGAGTGTTTCCCACAAAGGATCGATCCAGAAAGCTTCTTGCTTGCTGTTCACATGGCAGCGGAGGCGGGGAATACATACTTTCGACTCGGATATAACAGCTTGGGCGCATTCGCCACCATCAATCACCTTCACTTTCAGGCATATTACTTGGCTGTCCCTTTCCCGATTGAGAAGGCGCCGATGAAGAAAATAATCACGTTGAAAGATGGAGTGTTGGTCTCTGAACTGCTTAAATATCCGGTTAGAGGGCTTGTGTTCGAGGGCGGAAATTCTTTGCAAGCTCTATCGAACTCGGTTTCTGATGCCTGCATATGCCTTCAAGAAAACAACATTCCATTCAATGTCTTAATTGCTGATTGTGGGCAACGGATCTTTGTTCTTCCACAGCTGATTTTATCGAATGGCTATGTATATTCTTATTATTACTCCGACCTGACCGATCACAACGAACAGTGTTATGCCGAGAAACAAGCACTTGGGGAAGTGAGCTCAGAGCTCCTCGAAACCCAAGTGAACCCAGCTGTTTGGGAGATAAGCGGTCACATGGTATTGAAGAGGAAGGAGGATTATGAAGAGGCGTCGGAGGAAAATGCATGGAGGCTCCTCGCGGAGGTATCCCTATCAGAAGAGAGGTTTCAAGAAGTGTGTGCGCTCATATTTGAAGTCATCAATACAGGTGATGCCGAAAATGCTGAAGGTAGCCCGAGTTGCCCAAAGGAGCAAAGTGATGCTTGCGTCAAGAAAGTGGAAGCCAAAAACGCCTCCCCTCGACTCCCGGTGACCGTATCTTCTAGTGAGTGA 1398 47.14 MLSIKRVPTVVSNYQKDEAEEVSRRGGCGRNCLNKCCIEGAKIPLYAFKELNKIACSKGLCCQYENSVPPVAFLDSLLLGEWEDRMQRGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFRFEPNENGGDTEFIPNAPVDVENSPSVVAINVSPIEYGHVLLIPRVLECFPQRIDPESFLLAVHMAAEAGNTYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKAPMKKIITLKDGVLVSELLKYPVRGLVFEGGNSLQALSNSVSDACICLQENNIPFNVLIADCGQRIFVLPQLILSNGYVYSYYYSDLTDHNEQCYAEKQALGEVSSELLETQVNPAVWEISGHMVLKRKEDYEEASEENAWRLLAEVSLSEERFQEVCALIFEVINTGDAENAEGSPSCPKEQSDACVKKVEAKNASPRLPVTVSSSE 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9500763 9504386 - CmoCh01G011630.1 Cmo01g01163 374646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01163 465 PANTHER GDP-D-GLUCOSE PHOSPHORYLASE 1 350 433 IPR026506 GO:0080048
Cmo01g01163 465 PANTHER GDP-D-GLUCOSE PHOSPHORYLASE 1 3 329 IPR026506 GO:0080048
Cmo01g01163 465 PANTHER GDP-L-GALACTOSE PHOSPHORYLASE 2 3 329 - -
Cmo01g01163 465 PANTHER GDP-L-GALACTOSE PHOSPHORYLASE 2 350 433 - -
Cmo01g01163 465 SUPERFAMILY HIT-like 173 247 IPR036265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01163 K14190 VTC2_5; GDP-L-galactose phosphorylase [EC:2.7.7.69] - csv:101205337 771.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01163 Cmo09g00968 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01163 Cmo-Chr1:9500763 Cmo13g00521 Cmo-Chr13:6104614 2.56E-30 dispersed
Cmo01g01163 Cmo-Chr1:9500763 Cmo09g00968 Cmo-Chr9:5110949 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g556 Blo03g00546 Blo03g01457 Bda07g00375 Bda09g00406 . Bpe08g01115 . . . . Cma01g01117 Cma09g00966 Car01g00988 Car09g00881 Sed01g1878 Cpe06g00781 Cpe02g00786 Bhi09g01684 Tan01g3114 Cmetu01g0669 . Hepe01g1255 Mch11g1207 . . . . . . . . Cone6ag0049 Cone9ag0059 Cone14ag1166 Cone15ag1179 Lsi02g01888 Csa07g01113 . . . . . . . . . Bma14g00326 . Cmo01g01163 Cmo09g00968 . . . . . . . . . . . . . Cla09g01026 Cam09g1081 Cec09g1080 Cco09g1101 . . Cre09g1046 . . . Cme01g01006
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004490 2 1 3 1 1 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01163 Cmo_Chr01 FPKM 189.187958 197.953873 116.603661 110.308205 179.983871 219.176239 166.067764 100.3535 100.99054 96.309456