Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01166 ATGGAGTTCAGACCTCGGGATTACAGTGCTGAAGCAAAGCTGTTTTTGCTGCATCGTGATCGCGCAGAAACGGATCCTCTTTCTGTTCCATCGTCCCAGCAGGCCAACATTGCTGATGATCAAATTGTCAAATATGATGATCCACTTAGAGCGTCAGATGATGATGCAACTGTTTCAGGCGTCTATTTGGAAGACAAAGAAAATTCTTCTGCCACAGGAGTGCCTTCTGAATCTGTCTTTCCACCTGCAGAAAGGGATTGGTCCTCGTTCACGAGATTCATGATGCAGAGATTTGCTGCCTCTAAATTGGTCTCAGTTACTTCAGTGTCCAATGCAATATTAAAAGTTGGGAAAACATATGAGAGATCTTCAACTGACAAGCATTTGGAGGAAATTGAAGATCATCAGAACATTACAGAAAATGAAGTCAAGGTTGTTACACGCCAAGATTATATCAACCGCTTGCGTGAATTCAAGGATGACTTGGTTCGTGCTTGGAATGCAAGTGATCGCGTGACATCTTTGAAGATATCTGTGAAGGTTGCCAAGCTTCTGAAGGATACGTCTGTTTTGCAATTTTATCCCACACTTTTTGTTCTAGTCACGGATATTTTGGATATGCTTGGAAATTTTGTGTGGGATCGCATCAGGAGTAAAGCTGAGTTCACTGAAGATGGGGCCAGATTTTGCTCCTTGCCAGAGCACTTCAAAATAAAGGACATTTGCCAAAACGCAAAGGAAACATGTTATAACTGGTTTTGCAAAGTTGGTGCTATTCAAGAACTTCTTCCGCGCATTTATTTGGAGTTGGCCTTATTGCCTTGTTGGCAATTCTTGGATGATCAACCTGTTGTCGTCATACAGCGCTTGGTGATGATGGCTAGAGGAATAGCTGATCCTTTGGCATCTGCTTATTGTCGTTTGTACTTGACTCATTGTGCACAGAAGTTGCCCTCTTGTGATATAGGATTGCTAGTGTCATGTGTCAATGACACGAATGCTCAATTGAAACATTTCATACCAGCAAAAGAAACCAAAACTGGCAGTTCTACGGATAGCAAAGTCTTGCTTGTTGGTGTGATAGAGCCTACAATCGAATATATTGTAAAATGCATATTTAAGAAAGTCTCTCAGAGACAATTAGAGGGAACACTTATAGCGCTTGGACTGGGAAGAAATATGGAGAATTCACAGTGTGTCTCAATCGTTCTTCATTACATACTAAAGGAACTTCCTGTTGAAGTATTAAGCTCGAAGGCTATGGAATTTCTCCACCTTATTGATCGCAGCAACGATTCATCCTTCCGTCAGTTCTTGAATTACAGGTTACATGGGATCAGGCTTTGTGAAAGGAGACCTCCTGTGGATATTGTGGATGCCGTAATGCATAATGTACTTGAGGTTATTGCACAAAATGAGAGCCTGGACGAGTATCTGACAGTCATTGATGCCTATTTGGATATTGTACTTCAAAACCATTTGGATAGCCGTGTAAAAACGATTTTAGATGTGATTTCACAGCGAACATGCAATAGAGGGATAGATGAGAATGGACTCCTCAGTTTGCAGTCAATTATGGGGAAGCTTCTTTCTCATTACCAGCATTTGGAAGATGTATTTGCACTAAGCCATTTTCTGGAGATTTTGGATTTGCTTGTCGGGAGACCAAAAGGCATTATCATTATTAATATTCTTAAGATGGCTACAAGGAGCTCCTATATACGTGATCCAGCAACCGTAGAATTGCTTTTTGAAATTTCCCAGGCTCTTAATGATAGCTTTGATTTTGCCAACATGAAAGATGATGAAAATCAACCAGCACATTTGCTTTCTCGTTTTGTCCAACTGGTGGACTTTGGGAAAGAGAGGGAGCGCCATCTAGCATTCCTTGTTGAGTGTCGTGGAGCATTTGGTACCATAGATGAGGTTAAGGACACTCTCGTGCATTCTAGCAATGGTTTAGCAGTAAAGGCTTTGAAAGATGCGAAGAAGCATGGCAATTTTGTCAAATCCTGCATAGCGTTTTCTGAAGTCACATTACCGTCAATATCAACTCATATTAAGCAGTTCAATCTTTACCTTGAGACTGCCGAGGTTGCTTTGTTAGGTGGTTTAATTTCTCATTCGGGTGATTTAATAGATTCAGCAATCAGCTGTTTGCACAATGTGGACATTAAGGAAGGCTCCCGTGCAGCAGCCGACGCTGATCTTTTACTCTCCTCAATTCAAAAGTTATGCAGCCTCTTGGTTATGCTTCCTGGTAATCCTGATCATGGAAGTGCATACTTCCCGAAGATTTTGGTATCATTTGTAAATGATATACCATGGATGACACCTAAAATGAGGACAAGGATTTTATGTGCTATACTTTCATTGTTGGCTACATGTTCCCAAAATAGACTCCCATATCATGCAGATAATGGACTGTTGTGGGGTTTGAACAATGTCTTCTTTGGCGACTCGGCCTACTTGCATGAACTTGTCTCTTTGTCTGAGCTTATTGTACAGAATCTCGTTAATGCTCTTCAGCAAGAGTCTTCTGGGGCCGCACGTGGAGTACTGGCGCTTGAAGTTTGTGATTCCATCTTATCGTCTTTCACTCTAAAAGACGAAACATATGCAATTTGCTCCAATCTGATGGAGACTGCTAAACTGTGTATGAGTGACAGCAACAAATATTTGCAGTCAACCTCCCAACGCCTAGAGGAAATGTCACAATCGTCAGTGAAATGCTGA 2736 41.41 MEFRPRDYSAEAKLFLLHRDRAETDPLSVPSSQQANIADDQIVKYDDPLRASDDDATVSGVYLEDKENSSATGVPSESVFPPAERDWSSFTRFMMQRFAASKLVSVTSVSNAILKVGKTYERSSTDKHLEEIEDHQNITENEVKVVTRQDYINRLREFKDDLVRAWNASDRVTSLKISVKVAKLLKDTSVLQFYPTLFVLVTDILDMLGNFVWDRIRSKAEFTEDGARFCSLPEHFKIKDICQNAKETCYNWFCKVGAIQELLPRIYLELALLPCWQFLDDQPVVVIQRLVMMARGIADPLASAYCRLYLTHCAQKLPSCDIGLLVSCVNDTNAQLKHFIPAKETKTGSSTDSKVLLVGVIEPTIEYIVKCIFKKVSQRQLEGTLIALGLGRNMENSQCVSIVLHYILKELPVEVLSSKAMEFLHLIDRSNDSSFRQFLNYRLHGIRLCERRPPVDIVDAVMHNVLEVIAQNESLDEYLTVIDAYLDIVLQNHLDSRVKTILDVISQRTCNRGIDENGLLSLQSIMGKLLSHYQHLEDVFALSHFLEILDLLVGRPKGIIIINILKMATRSSYIRDPATVELLFEISQALNDSFDFANMKDDENQPAHLLSRFVQLVDFGKERERHLAFLVECRGAFGTIDEVKDTLVHSSNGLAVKALKDAKKHGNFVKSCIAFSEVTLPSISTHIKQFNLYLETAEVALLGGLISHSGDLIDSAISCLHNVDIKEGSRAAADADLLLSSIQKLCSLLVMLPGNPDHGSAYFPKILVSFVNDIPWMTPKMRTRILCAILSLLATCSQNRLPYHADNGLLWGLNNVFFGDSAYLHELVSLSELIVQNLVNALQQESSGAARGVLALEVCDSILSSFTLKDETYAICSNLMETAKLCMSDSNKYLQSTSQRLEEMSQSSVKC 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9524191 9542468 + CmoCh01G011660.1 Cmo01g01166 374649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01166 911 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 1 908 IPR029705 GO:0032456
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01166 K25731 VPS35L; VPS35 endosomal protein-sorting factor-like - csv:101204283 1470.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g544 Blo03g00550 . Bda07g00371 . . . . . . . Cma01g01118 . Car01g00991 . . . Cpe02g00783 Bhi09g01665 . . . . Mch11g1203 . . . . . . . . . Cone9ag0063 . . Lsi02g01892 Csa07g01109 . . . . . . Bpe11g00556 . . Bma14g00330 . Cmo01g01166 . . . . . . . . . . . . . . Cla09g01021 Cam09g1077 Cec09g1077 Cco09g1098 . . Cre09g1043 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003267 1 12 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 2 1 1 2 5 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01166 Cmo_Chr01 FPKM 22.553076 23.464651 51.507729 55.001743 34.052555 38.325661 34.72176 55.692467 54.226761 60.524242