Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01167 ATGGACTGGACCAGAGGCCCCGCCGTCGGCCGCGGTTCGTCCGCCACCGTCTATTTGGCCACCACCACCACCTCCTCTTCCACCTCGCGCCAATTCGCTGTCAAAACCACTGACCTCTCTACATCGGAGTTGTTGCGGAAGGAACACGCTCTTCTCTCTAATTTGAACTCGCCATACCTAATCAACTGCTTTGGTTTCGACGTTGAGGTTGAAAGCTCTAAGTCGCCGGTTTTCAATCTGTTTATGGAGTATTTACCGGAGGGGACGCTGTGGGATGCTATTCAGAGACACGGTGGACGGATGGAGGAATCGATGATCGGGGCGTATTCGCGCCAGATTCTCAAAGGATTGGAGTATCTTCACGCGAATGGATTGGCGCATTGTGATATCAAGAGCCGGAATCTGTTGTTGAGTGGTGAGGGCTTGAAAATCGCGGATCTAGGTTGTGCGAAATTTGTGGAAGGAGGAGGAGTTTCTGGAAATGGAGTTAGGGCTTTTTCTGGTTCGCCTGCGTACATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGATTTCCAGCGGATGTTTGGGCGTTTGGATGTACGGTCATTGAAATGGCTACCGGTAATCATCCATGGACGGGGTTGGAGGATCCGGTATCAGCTTTGTATACGATTGGTTTTTCCGGCGAGGTTCCGGAGATTCCGCGGTGGTTGTCGGAGGAAGCGAGGGATTTCGTCGCTAAGTGTTTGATAAAAGACCCGAAAGAACGATGGAGTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGACTCTGAATCCGAAATTGAATGTTCGAGGAAGAAAACGACGAGTTCTTCTCCAAGCTCTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGAGCCATCAAGCTTCTCTGGCGGATTCTCCGGCAGAGAGGATTAGAAGCTTGGCTGGAAATCTGTCTTCCAATTGCGATTGGGAATGGGATGATGAACGAGATTGGGTCTTGATCAGAAACAACGACGTTGACGGAGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTCCTGAAGAAAAAGAAGAAGAAGAAGAGATGTTCTACAAATCTCATCCCCTTGTTCAAGAATCATAG 1152 49.48 MDWTRGPAVGRGSSATVYLATTTTSSSTSRQFAVKTTDLSTSELLRKEHALLSNLNSPYLINCFGFDVEVESSKSPVFNLFMEYLPEGTLWDAIQRHGGRMEESMIGAYSRQILKGLEYLHANGLAHCDIKSRNLLLSGEGLKIADLGCAKFVEGGGVSGNGVRAFSGSPAYMAPEVARGEEQGFPADVWAFGCTVIEMATGNHPWTGLEDPVSALYTIGFSGEVPEIPRWLSEEARDFVAKCLIKDPKERWSVKRLLEHPFLQGFDSESEIECSRKKTTSSSPSSVLDQSFWDSMEDLETPLKVSHQASLADSPAERIRSLAGNLSSNCDWEWDDERDWVLIRNNDVDGGSHGNGSVSSDFPEEKEEEEEMFYKSHPLVQES 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9545207 9546561 + CmoCh01G011670.1 Cmo01g01167 374650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01167 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cmo01g01167 383 CDD STKc_MAPKKK 2 263 - -
Cmo01g01167 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 354 - -
Cmo01g01167 383 Pfam Protein kinase domain 7 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01167 383 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01167 383 Gene3D Transferase(Phosphotransferase) domain 1 2 323 - -
Cmo01g01167 383 MobiDBLite consensus disorder prediction 346 383 - -
Cmo01g01167 383 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Cmo01g01167 383 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 354 - -
Cmo01g01167 383 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01167 383 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01167 Cmo-Chr1:9545207 Cmo11g01890 Cmo-Chr11:13141047 2.57E-104 dispersed
Cmo10g00574 Cmo-Chr10:2614643 Cmo01g01167 Cmo-Chr1:9545207 3.43E-41 transposed
Cmo01g01167 Cmo-Chr1:9545207 Cmo19g00939 Cmo-Chr19:8635652 1.70E-99 wgd
Cmo01g01167 Cmo-Chr1:9545207 Cmo02g00180 Cmo-Chr2:852639 1.23E-103 wgd
Cmo01g01167 Cmo-Chr1:9545207 Cmo03g00571 Cmo-Chr3:5572843 2.01E-100 wgd
Cmo01g01167 Cmo-Chr1:9545207 Cmo09g00962 Cmo-Chr9:5072083 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74045 PF00069 Pkinase 4.50E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01167 K20716 - bhj:120084748 586.26