Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01175 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGGAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTACGACGATTTTCTTGAAGAAGACGACGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTGAACCAGAGCAGAGACGGAGAGCATCTGTCGCCGGTGGCCAGACTTTCTAGGTCAGGAGCGCGTGGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGTGAAGAAGAGGATGAAGATGAAGATGGAGATGAAAATGAAGATGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTCCAGGTTTATTCCAATTTTGTCTTCTTTTGATCTTTGAGATTAGGACTCCCTCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGGTCTGCAATTTCCCCCTCTTTAAGTGGTTGTTTCAACTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGCGTGACGTATTTCTGATATGCTCAAATGCAATGCAATACAATTCACCAGAAACCATTTATCACAAACAGGCACGTTCCATTCAAGAGCTTGCCAAGAAGAAATTTGAGAGGGTAAGAAGTGAAGTTGAACGCTCGGAGAAAGAGTTGAAGTTGGAGCAGAGTACAAAATTCAATTCATACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTTCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGGCACAGGCGATGTACAGAACAGTTCCAATCCAATCCATGGTGCTCACCGTGAGGTTCCTAACAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCCTTGATACTACTAATCTGGACAGGGCTGAAGAGCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTAGGGAGAAAGACATCTGTGTTTGATGACAACCGTCGTGCAACTTACAATATTTCTAATTCACCAGCGCCAAGATCGGAGTCGATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGACTTCATGCGGAGAATTCCTATGCAAGGAGTCTGGCTCGATTTGCTGCGACACTCGGTCCTAGTGCGTGGAAAGTTGCATCCCAGAGGATTCAGCAGGCTGTACCTGTTGGATGTAAATTTGGCCGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACACCAGTATTATTGTTTGAGAACAACAACCAGAAGGAACTTGGTTTTAATAATAACTTGCATTCTACCAGCGAATTAAGAAAGAAGGATGGAAAGCCTTCAGACACTCCTTTGCCAAAGAAGGAATGTCCTCTAAGTGCACCAAGTACAGAGGTGAATGGTCTCGCTAGAGGATCCACCTTAGATGGGAAACCATCTTTCTTTAGGTCCTCCACCCCAAGTCCCGGTCTATCGCCACGGAAAAACCGACAGACCAAGAATTTTACAGAGGGAGAGAAGGTTAAAAACCAAGTTGAGTTAAATTCCTTGCCCTCATTTAAACAAAATAATGTTGATCTCGGTGTAGAGAAGCAGCTTCCAGCCAATCTGAATATGACTACTTCTAGATCTAGAGATGTTTCGTCGGTAAACTTGAATCTTGTGCAATCTGCGACATATAAACTCCCCAGTGTTAATGGCGTGGTGGCCGGAGGATTGTCTAACGGTAAATTCCCGATCAATTGTTTGAATAGTCCACGGGCTGCTGTATCGTCTCCTAGCTTGCCTTCTCAAACAGCTCCAGTGGCAACTTCCCATGGACAGGACCTACACCCCAGTAAGCCGGTACAATTGATGAGAATGATGATACCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCTGCCAGCTTTATCATCAGCTCCTTCTGTAATGAGAGACGATTCTAATAATGCTGCTGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATAATTCCACACCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGAGAATTTCATCCACAAATGACACGAGCATGGGGCGAGTTTCGTGCTGGAGGCAATCAGCTTCAGTCTGAGAAGAGTAATTTCCCTATGCAGGCATTTGTTCCACAAGCCACTCTTGTAGCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTTCAGGCCGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCAAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACACGAAATGCTTCCTCCCGACTTGAATATTGGTTTTCATTCTCCTGGGTCTCCCGTGAAACAATCCTCTAGTGTTCTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 2715 46.08 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEEDDEDEEENERRREKKLKLVVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSASEGEDEPERKPLKKRRIGGGEEEDEDEDGDENEDDDIDEERGRKVGSKGSDSVPGLFQFCLLLIFEIRTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEEVCNFPLFKWLFQLPDYHDVIEHPMDFATVRNKLANGSYSTLEQFERDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRSEVERSEKELKLEQSTKFNSYIKKQPPKKPFFRTFQEPIGSDFSSGATLAGTGDVQNSSNPIHGAHREVPNNIDGQVEGSSSFLDTTNLDRAEELFSGKGLLGKLGRKTSVFDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVAVGLHAENSYARSLARFAATLGPSAWKVASQRIQQAVPVGCKFGRGWVGEYEPLPTPVLLFENNNQKELGFNNNLHSTSELRKKDGKPSDTPLPKKECPLSAPSTEVNGLARGSTLDGKPSFFRSSTPSPGLSPRKNRQTKNFTEGEKVKNQVELNSLPSFKQNNVDLGVEKQLPANLNMTTSRSRDVSSVNLNLVQSATYKLPSVNGVVAGGLSNGKFPINCLNSPRAAVSSPSLPSQTAPVATSHGQDLHPSKPVQLMRMMIPERAPKQENSSNQSSSDSLPALSSAPSVMRDDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRAGGNQLQSEKSNFPMQAFVPQATLVANEQQLQNRSMIYPQLVQADMSKFQLQSTWQALSPHNQPRKKHEMLPPDLNIGFHSPGSPVKQSSSVLVDSQQPDLALQL 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9581001 9585847 + CmoCh01G011750.1 Cmo01g01175 374658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01175 904 MobiDBLite consensus disorder prediction 130 145 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 715 741 - -
Cmo01g01175 904 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 904 - -
Cmo01g01175 904 CDD Bromodomain 189 297 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 62 78 - -
Cmo01g01175 904 Gene3D - 188 321 IPR036427 GO:0005515
Cmo01g01175 904 MobiDBLite consensus disorder prediction 881 904 - -
Cmo01g01175 904 SMART bromo_6 182 302 IPR001487 GO:0005515
Cmo01g01175 904 MobiDBLite consensus disorder prediction 858 904 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 715 744 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 348 374 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 675 699 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 565 585 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 516 592 - -
Cmo01g01175 904 PRINTS Bromodomain signature 264 283 IPR001487 GO:0005515
Cmo01g01175 904 PRINTS Bromodomain signature 246 264 IPR001487 GO:0005515
Cmo01g01175 904 PRINTS Bromodomain signature 230 246 IPR001487 GO:0005515
Cmo01g01175 904 MobiDBLite consensus disorder prediction 1 158 - -
Cmo01g01175 904 Coils Coil 290 317 - -
Cmo01g01175 904 Pfam Bromodomain 196 287 IPR001487 GO:0005515
Cmo01g01175 904 MobiDBLite consensus disorder prediction 1 15 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 348 366 - -
Cmo01g01175 904 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 904 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 33 48 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 675 693 - -
Cmo01g01175 904 MobiDBLite consensus disorder prediction 110 129 - -
Cmo01g01175 904 ProSiteProfiles Bromodomain profile. 201 283 IPR001487 GO:0005515
Cmo01g01175 904 MobiDBLite consensus disorder prediction 524 538 - -
Cmo01g01175 904 SUPERFAMILY Bromodomain 176 305 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01175 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1352.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01175 Cmo09g00956 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01175 Cmo-Chr1:9581001 Cmo11g01786 Cmo-Chr11:12559458 3.69E-80 dispersed
Cmo01g01175 Cmo-Chr1:9581001 Cmo09g00956 Cmo-Chr9:5032917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01175 Cmo_Chr01 FPKM 57.111111 52.033985 33.857437 31.632233 45.619038 40.220497 37.637203 45.209423 49.78788 47.232185