Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01179 ATGGCGAAAAGCTTACAGGGAGGAGGCCAAAACCTCCCAGCAGACGTGACGCAGGTGATTGATCAGTTGGAGCGCCACTGCTTGGCTCCCGATGGATCTCTCGTCTCCAAGCCCGTTCACTACGACCTACTACTCGCGAGAGAAGAAATGTCGAGGGAGAGATTGCGTTATTTGGAAGCCATGGTGGGTGGTTTTTACTTTGATTCTCTATTTCTAGGTCCTGCAATCTATTCTGAAGCAATTGCGATGGTGGAAGAGTACCAACAGGCTGTTTCAATGGCGAACCTTGGCGGAGTTCGAGATGGTCAGGCTCTTTATCCACAACTAGGTTTGAAGAATTCGGCTCAGGTTTATGAGACTCTTGAGCATCGAATGGTTGTGGCAGAAGCATCTCAAAGATTGAGACTTCCTCTTATATCAAAGGATGGTGAAATCCATGAGGAAGAGATTGAGAAGTTGAGTTTAGTATCTCGAAGTTCCCTTGATAGTACAAGCACTGGTGTCACAATCAGTTCAAGTTCTAACTCAACAAATTATGCGAGTGCGAATAGTGCTGGAAGCATAGTGAACAATAGTCTTTCGGTTAGCTCAAATGATAATGCAGAACCTGGAGTAGGTGGCGTTCCCAATCGCTTTCTTGGAATCACCCCTGCCTTCTTATGGCAAACACAGCTCCATCAAGTGCCTTCCATGGATATGCCCGAATATCAAATGGCTCTTTCCCGTGAGATTGATGCTCGTTTGAAGATTAAATGTGATAAGGTAGCTGATGCTTTTGTGATGGATGATATTGAATCATCATCTGGGCATCATAGCTCTAGTGCTCGGCTTCCAGAGAGGTCTGGTTGGCTCTTCCATGGCATTATTTCTTTGTTGGTCAAGTTGATCATTGAGGAGATTGAAAGGGAAGAAGAAGCTTTGCGGCAAGATCTTTACTCGGCAGACAGAAAGTTTGCTGAATATTACAATGTTCTTGAGCAGATATTGGGAGTATTAATTAAGCTTGTCAAAGATTTGAAGCTGCGGCATCAACATAAATATGACGATCTCCAGAAAACTTGGCTGTGCAAAAGGTGTGAGACGATGAATGCGAAACTGAGTGTTTTAGAGCACGTTCTCCTGCTAGAGACTTACACACAGGAATCTATACCAGCCCTTCATAAAATAAGAAAGTATCTTGTTGAAGCAACGGAGGAAGCTTCTATTTCTTATAATAAAGCAGTCACTCGACTCCGTGAGTATCAAGGTGTAGACCCACATTTCGACACAATTGCGAGGCAGTACCATGATATTGTAATGAAACTGGAGAATATGCAATGGACAATTCACCAAGTTGAGATGGACTTGAAACGCTTGCCAGATCAGTCAAGTACATGA 1377 43.79 MAKSLQGGGQNLPADVTQVIDQLERHCLAPDGSLVSKPVHYDLLLAREEMSRERLRYLEAMVGGFYFDSLFLGPAIYSEAIAMVEEYQQAVSMANLGGVRDGQALYPQLGLKNSAQVYETLEHRMVVAEASQRLRLPLISKDGEIHEEEIEKLSLVSRSSLDSTSTGVTISSSSNSTNYASANSAGSIVNNSLSVSSNDNAEPGVGGVPNRFLGITPAFLWQTQLHQVPSMDMPEYQMALSREIDARLKIKCDKVADAFVMDDIESSSGHHSSSARLPERSGWLFHGIISLLVKLIIEEIEREEEALRQDLYSADRKFAEYYNVLEQILGVLIKLVKDLKLRHQHKYDDLQKTWLCKRCETMNAKLSVLEHVLLLETYTQESIPALHKIRKYLVEATEEASISYNKAVTRLREYQGVDPHFDTIARQYHDIVMKLENMQWTIHQVEMDLKRLPDQSST 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9599515 9606590 + CmoCh01G011790.1 Cmo01g01179 374662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01179 458 Pfam HAUS augmin-like complex subunit 4 200 447 IPR029327 GO:0051225|GO:0070652
Cmo01g01179 458 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 1 450 IPR029327 GO:0051225|GO:0070652
Cmo01g01179 458 PANTHER BNAA06G02620D PROTEIN 1 450 - -
Cmo01g01179 458 Coils Coil 297 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01179 K16587 HAUS4, AUG4; HAUS augmin-like complex subunit 4 - csv:101203307 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01179 Cmo-Chr1:9599515 Cmo09g00953 Cmo-Chr9:5015254 9.19E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g516 Blo03g00555 . Bda07g00366 . . . . . . . Cma01g01128 . . . . . Cpe02g00774 Bhi09g01649 . . . . Mch11g1192 . . . . . . . . . . . . Lsi02g01902 Csa07g01095 . . . . . . . . . Bma14g00334 . Cmo01g01179 . . . . Car16g00539 . . . . . . . . . Cla09g01011 Cam09g1068 Cec09g1068 Cco09g1086 . . Cre09g1032 . . . Cme01g01032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006976 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 2 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01179 Cmo_Chr01 FPKM 0.0 0.0 0.108189 0.0 0.122612 0.136773 0.0 0.096491 0.0 0.0