Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01197 ATGAGAGTGAAAAGAAGAGCCACGTCAGATGTGACACGTGGGCAGGAGTGCAGTTCATCTGGAAACCCTGACTGGAAAAATCATATATGGAAACCCACAGTCCACAAAGCTGAACATGTTCATCGTATTCTCCGGATTTACTGCAAGAAATTCAAGGTTCAAGGGATTGTGAAGATGGACAACAATTACCCACAATACAATGAAGGTGCTGGCTCTTCTCACACATCCAACTCTCCTCAATGTGCCTCAAACTTTAACATCTTCGATCAATCAGCATCAAACTCAAACTCGAATGTAAAAGGTAACGAGCTCCATAGAGCGAGCGACCTTCTGATGGCGGTGTCGGTGTGCACGGAGGCAAACTTTTCGAGAATCGCCGACCTGGCCGACACGGCGATGGACGAGCTCATAAAAGCAGCTCTTGATGGAGATCCTCTATGGATGCCCCAACAAAATGAAGAAGCTGAATCTTACTATACATTGTTGGATATAATGAAAATGGTTGAGGTTGGAGAGCCTCCTTCTTCCAGCCTTCTTGACTTCGATCTTTTCAACACCAAATCCGACACTGAATCCAACATCAACAACAACACAAATTTGGGCTTTAAAGACAATCAACAACAACAACAACACTATCTTCAAACTGAGTTTTCAAGACAAACTGAATTTGTCAAAGTGGATCCACTCAGCATTGTTGGGTTTTTGATGGATTTGGAACAATGGTCACTTGTCTTCTCCGACATTGTTTCAAGAGCAGCAATTCTTCAAATGTGGTCATCAATGGGACCGGGAGGGACTTACGATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAGCTCGCCTCACCACTTGTAGAGACAAGAGAGAGCTACTTTGGGAGGTTTTGCAAGCAATTAGCTCCCTACACATGGGGAGTTGTTGATATTTCCTTGGAAGATCTCTTCCCTTACCCATCCATTGGCTTTTGTAGAAAACCCTCTGGCTGTTTGATCCAAGCATGTCCTGATGGAATCTCTAAGGTCATGTGGGTTGAACATGTGGAAGTTGACAACAGATGTGTTCAACCAATGTTCCAACCATATATCAACTCTGGTTTGGCATTTGGTGCAAAGAGATGGGTTTCTTCTCTGGTTAGACACTGCATTTGGCTAACTACTTTAGAAGCCAAGAGCACTTCAACAATCAATGGGGTTTCGATACTACAAGCTGGAAGGCTTAGCGTGTTGAAGTTGGCTGAGAGAATGACAAGGACCTTTTATAATGTTGTGAGTGGTTCTAAAGAAAATCCATGGATGAAAATTCCCATTCCTGGACCTCATGACATTAGGGTTATGACCCAGAAAGCCAAAGAGAATGATCCTGGACGTCCTCCGTGTACATCGGTGATCTTCGCTACTTCAGCTCAAGTTCCGAACAATCCGAATGAAGTTTTCCAGTTCCTTCGTCATGAGAAGTCTCGAAACAAGTGGGACATCCTTTCATTTGGTTACGTCATCACGGAACTTGCCTGCATTATCAATGGAAACGACTCGAGAAACCGGGTGTCGATAATTCAAGTGAACTCTTCGCCGAGAAAAGTCGAGATCTTCTACCTGCAAGAGAGTTACTTCGACGCAACGGGATCTTATATAGTCTATGCACCTGTTGACCTCTTTGCCATGTCGATACTCTTACGTGGAGGAAACCCAGATAATGTGGCTATCTTGTCTTCTGGTTTTGTTGTACTTCCAGATAACCTGAAAATGAATGGACAGGAAGTTGAAGCTGATGGTAGCATCGTGACAGTGGCCCTCAACATCGTTGATCATTCAATTACTGAAAGGATCCCATTTGATTCAATGGTTTCCATGCATAGGATTATGAATGAAACTGTAGCCTCAATCAAACAGGCTTTCCAAGTACAACAATTTTAA 1914 43.47 MRVKRRATSDVTRGQECSSSGNPDWKNHIWKPTVHKAEHVHRILRIYCKKFKVQGIVKMDNNYPQYNEGAGSSHTSNSPQCASNFNIFDQSASNSNSNVKGNELHRASDLLMAVSVCTEANFSRIADLADTAMDELIKAALDGDPLWMPQQNEEAESYYTLLDIMKMVEVGEPPSSSLLDFDLFNTKSDTESNINNNTNLGFKDNQQQQQHYLQTEFSRQTEFVKVDPLSIVGFLMDLEQWSLVFSDIVSRAAILQMWSSMGPGGTYDGTLQVMTAEFQLASPLVETRESYFGRFCKQLAPYTWGVVDISLEDLFPYPSIGFCRKPSGCLIQACPDGISKVMWVEHVEVDNRCVQPMFQPYINSGLAFGAKRWVSSLVRHCIWLTTLEAKSTSTINGVSILQAGRLSVLKLAERMTRTFYNVVSGSKENPWMKIPIPGPHDIRVMTQKAKENDPGRPPCTSVIFATSAQVPNNPNEVFQFLRHEKSRNKWDILSFGYVITELACIINGNDSRNRVSIIQVNSSPRKVEIFYLQESYFDATGSYIVYAPVDLFAMSILLRGGNPDNVAILSSGFVVLPDNLKMNGQEVEADGSIVTVALNIVDHSITERIPFDSMVSMHRIMNETVASIKQAFQVQQF 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9700078 9705920 - CmoCh01G011970.1 Cmo01g01197 374680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01197 637 SUPERFAMILY Bet v1-like 409 581 - -
Cmo01g01197 637 MobiDBLite consensus disorder prediction 1 25 - -
Cmo01g01197 637 ProSiteProfiles START domain profile. 118 386 IPR002913 GO:0008289
Cmo01g01197 637 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 634 IPR042160 -
Cmo01g01197 637 Pfam START domain 213 381 IPR002913 GO:0008289
Cmo01g01197 637 SMART START_1 183 383 IPR002913 GO:0008289
Cmo01g01197 637 CDD START_ArGLABRA2_like 123 381 - -
Cmo01g01197 637 PANTHER PROTEIN FWA, PUTATIVE-RELATED 60 634 - -
Cmo01g01197 637 SUPERFAMILY Bet v1-like 217 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01197 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 803.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01197 Cmo-Chr1:9700078 Cmo19g00954 Cmo-Chr19:8710347 3.08E-126 dispersed
Cmo01g01197 Cmo-Chr1:9700078 Cmo13g00750 Cmo-Chr13:7339496 2.33E-116 wgd
Cmo01g01197 Cmo-Chr1:9700078 Cmo02g00167 Cmo-Chr2:799348 1.53E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01197 Cmo_Chr01 FPKM 2.01825 1.831775 59.73991 59.062752 226.339447 240.704376 215.952118 78.594818 75.489044 77.419724