Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01199 ATGGAAGAAGTTCTTCTGGCAGTTCTGTCAATGCTGCTTGTTGCTGCATTGGTTCCTCTGTTTCTGTGGCGGCGCTATCAGGATTCTCGCTCTGCTCATGCACATGAAGATGAGGATCAGGTTCCTCAGAGGGAAACTGCGGTTCGCGCCGCTGGTGGTGGCCGTCGTATGCGTCGTAGACCTGCTTCGGCTGCTAGTTCCTCGAACGCGGGGGCATCTCTGGAAGGGGAGTATGGGGCAGAAAGTGCTGATGGAAGTGATGATGAAATCCCTGCGGATGAATACCATGATGGAAGAGTATCGAAGAAGAAAGAAAAGAAGCGACAAGAGCGTGAGGCACAAAGACAGGCTGAACAAGCTTCCCGTGACTCAAGGGTGACAAAAAAAGACCGTTATGAAGAAATGCGGAGGAAGAAAGATGAGGAGCGTGAGGAACAGGAACGATTACTGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAAGCTGCTGCACTTGAGTTTGAGAAGTGGAAAGGGGATTTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGTGGAAATCAAGATTTGTGTCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAGCTCAGAACTCAGGAATGTATTAATCGGATCACCTCCCTGGAGAGTATGGGTCGACTTTCTGGTGTTATGGACGATAGAGGGAAATATATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGAGTACATCCAGCATCAGGGAAGAGTAAGCATTTCACATCTAGCTAACTCGGTGCTTCAAGTAACCCAAGATGACTACGCCAATTGCAGCATCCAAGCGCCAATCAAACAGTACTCCGATGGCCATACTGTTTTCCAGTTTGACAAATCAGGGGCTTACTATTTTATCAGTGGAAACAAAGCCAATTGCCTCAAAGATGAGAAGCTGGTTGTGGTTGTTTTGGCTGATAGAACCAATTCAACCACTTTGCCTCCTCCACCCTCAGCTCCCTCTCCTGCGCCTGCAAATGATCAAACTTGGGCGCCTTCTAACGAAACCAACCCGTCTCCGCCACCCGCTGAGGAAACCAACCCGTCTCCGCCACCGGGGACGGTTGAGATCAGCCCATCTCCTGCGCCTTCTGTGCAAGAGGCTCCACCACCGCCACCGAGGACGGTTGAGATCAGCCCATCTCCTGCGCCTTCTGGCCAAGAGGCTCCACCTCCGACGGTTGAGATCAGCCCTTCTGCTCCTATATCGCCACCTCCGAGTCTTGGATATTCGATCCTTCCGAGCAGCATTGGCTCCGTTGGAGCATTTGTTGCTGCTGCTGCTATCTTAGCTTGA 1359 50.26 MEEVLLAVLSMLLVAALVPLFLWRRYQDSRSAHAHEDEDQVPQRETAVRAAGGGRRMRRRPASAASSSNAGASLEGEYGAESADGSDDEIPADEYHDGRVSKKKEKKRQEREAQRQAEQASRDSRVTKKDRYEEMRRKKDEEREEQERLLEEEAKARKAKEEEAAALEFEKWKGDFSVDAEGTTEAEVEGGNQDLCHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISKEEMQAVAEYIQHQGRVSISHLANSVLQVTQDDYANCSIQAPIKQYSDGHTVFQFDKSGAYYFISGNKANCLKDEKLVVVVLADRTNSTTLPPPPSAPSPAPANDQTWAPSNETNPSPPPAEETNPSPPPGTVEISPSPAPSVQEAPPPPPRTVEISPSPAPSGQEAPPPTVEISPSAPISPPPSLGYSILPSSIGSVGAFVAAAAILA 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9715960 9722568 - CmoCh01G011990.1 Cmo01g01199 374682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01199 452 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 81 269 - -
Cmo01g01199 452 ProSiteProfiles Phytocyanin domain profile. 266 326 IPR003245 GO:0009055
Cmo01g01199 452 Pfam DDRGK domain 98 268 IPR019153 -
Cmo01g01199 452 SUPERFAMILY Winged helix DNA-binding domain 197 250 IPR036390 -
Cmo01g01199 452 Gene3D - 253 335 IPR008972 -
Cmo01g01199 452 MobiDBLite consensus disorder prediction 33 147 - -
Cmo01g01199 452 MobiDBLite consensus disorder prediction 356 429 - -
Cmo01g01199 452 SUPERFAMILY Cupredoxins 266 325 IPR008972 -
Cmo01g01199 452 Coils Coil 125 170 - -
Cmo01g01199 452 Coils Coil 99 123 - -
Cmo01g01199 452 MobiDBLite consensus disorder prediction 331 430 - -
Cmo01g01199 452 MobiDBLite consensus disorder prediction 92 147 - -
Cmo01g01199 452 Gene3D - 196 242 IPR036388 -
Cmo01g01199 452 PRINTS Proline rich extensin signature 369 385 - -
Cmo01g01199 452 PRINTS Proline rich extensin signature 401 426 - -
Cmo01g01199 452 PRINTS Proline rich extensin signature 341 362 - -
Cmo01g01199 452 PRINTS Proline rich extensin signature 329 341 - -
Cmo01g01199 452 Pfam Plastocyanin-like domain 266 317 IPR003245 GO:0009055
Cmo01g01199 452 SMART DDRGK_2 98 271 IPR019153 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01199 K23344 DDRGK1; DDRGK domain-containing protein 1 - csv:116401635 296.589
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01199 Cmo16g00907 CCT
Cmo01g01199 Cmo04g01014 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01199 Cmo-Chr1:9715960 Cmo04g01014 Cmo-Chr4:5089328 1.08E-28 dispersed
Cmo01g01199 Cmo-Chr1:9715960 Cmo16g00907 Cmo-Chr16:5419212 3.49E-29 wgd
Cmo01g01199 Cmo-Chr1:9715960 Cmo09g00929 Cmo-Chr9:4853765 3.03E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007655 1 2 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01199 Cmo_Chr01 FPKM 23.981817 24.342279 47.537487 53.47929 8.896909 10.06031 11.697544 407.639648 428.058929 450.086426