Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01205 ATGGTATCCCCTGAAAATTCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCCGTTTCGGATGCGAATTTCCCAGTCACCAGTTCGAGCTTCTCGTGGGCTGTTCAACCCTTTGATGGCACCCATGATGTCGGTGCGGAAATTGATGGGTCATCGGCAGATCTGGATGGTCGTCTAGAATCTGGCTCCAAGAAGAGGGTCCGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAAAAATTGCGGAGAGATAGGCTCAACGAGAAGTTTCTGACACTGGGCTCCATTTTGGAACCTGGAAGGACACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTACGTAGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTGCAGGATAAGATTAAAGAACTGAAGGCTGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTGAAGGCCGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCACCCTGCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGAGTCAAGCTCCTGGCGGTAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTAGCCATGTGGCAGTTCATGCCTCCTGCTGCAGTCGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCCTAA 711 49.37 MVSPENSNWLFDYGLIDDIPVSDANFPVTSSSFSWAVQPFDGTHDVGAEIDGSSADLDGRLESGSKKRVRSDSCSGSSSKACREKLRRDRLNEKFLTLGSILEPGRTPKTDKAAILVDAVRMVNQLRSEAQKLKESNSSLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSMHAHPAGFLPPPIPTFAAQSQAPGGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9755296 9758427 - CmoCh01G012050.1 Cmo01g01205 374688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01205 236 CDD bHLH_AtILR3_like 80 155 - -
Cmo01g01205 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
Cmo01g01205 236 SMART finulus 81 132 IPR011598 GO:0046983
Cmo01g01205 236 Coils Coil 116 178 - -
Cmo01g01205 236 MobiDBLite consensus disorder prediction 51 81 - -
Cmo01g01205 236 Gene3D - 66 124 IPR036638 GO:0046983
Cmo01g01205 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Cmo01g01205 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Cmo01g01205 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cmo01g01205 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cmo01g01205 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01205 Cmo16g00916 CCT
Cmo01g01205 Cmo16g00916 ECH
Cmo01g01205 Cmo09g00921 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01205 Cmo-Chr1:9755296 Cmo04g01008 Cmo-Chr4:5073534 9.50E-112 dispersed
Cmo03g00709 Cmo-Chr3:6141152 Cmo01g01205 Cmo-Chr1:9755296 2.64E-21 dispersed
Cmo07g00424 Cmo-Chr7:1922093 Cmo01g01205 Cmo-Chr1:9755296 1.36E-22 dispersed
Cmo01g01205 Cmo-Chr1:9755296 Cmo13g00728 Cmo-Chr13:7265344 3.08E-71 wgd
Cmo01g01205 Cmo-Chr1:9755296 Cmo16g00916 Cmo-Chr16:5522341 4.70E-119 wgd
Cmo01g01205 Cmo-Chr1:9755296 Cmo18g00301 Cmo-Chr18:1954504 3.71E-39 wgd
Cmo01g01205 Cmo-Chr1:9755296 Cmo02g00151 Cmo-Chr2:740367 9.68E-82 wgd
Cmo01g01205 Cmo-Chr1:9755296 Cmo09g00921 Cmo-Chr9:4812733 5.39E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9094 PF00010 HLH 6.40E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01205 - - csv:101215402 400.979