Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01206 ATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAATGGGGCTTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAGTCTCATTGACAAGAAGATTAGCTCTTACCAGTCTCACATCTGTCGCTCTCTTTGGCAATGCATCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTCTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACAGGTACTCGATCGTTTTTGAAGACGGGGATTTACATAGCTAACATAGGGACGGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAACTATGTGAGGAAATATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGACTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAA 657 43.99 MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTSVALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9758877 9759897 + CmoCh01G012060.1 Cmo01g01206 374689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01206 218 SUPERFAMILY Oxygen-evolving enhancer protein 3, 108 218 IPR023222 -
Cmo01g01206 218 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 1 218 - -
Cmo01g01206 218 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 1 218 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cmo01g01206 218 Gene3D - 80 218 IPR023222 -
Cmo01g01206 218 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 24 218 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01206 K08901 psbQ; photosystem II oxygen-evolving enhancer protein 3 - csv:101215878 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01206 Cmo-Chr1:9758877 Cmo13g00725 Cmo-Chr13:7252289 7.28E-09 dispersed
Cmo01g01206 Cmo-Chr1:9758877 Cmo18g00310 Cmo-Chr18:1984712 5.55E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g418 . . . . Bpe09g00197 . . Bma13g01024 . . Cma01g01153 . . . Sed07g2652 . Cpe02g00748 Bhi09g01948 Tan01g4503 Cmetu04g3024 . Hepe01g1313 Mch11g1150 . . . . . . . . . . . Cone15ag1136 Lsi04g01247 . Chy04g01018 . . Blo10g00803 . Bda12g00884 . . . . . Cmo01g01206 . . . . Car16g00565 . . . . . . . . . Cla05g01541 Cam05g1649 Cec05g1654 Cco05g1693 Clacu05g1642 Cmu05g1537 Cre05g1647 . . . Cme04g00802
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011918 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01206 Cmo_Chr01 FPKM 8.664335 8.810512 22.470798 23.906292 104.760605 84.070915 104.329056 30.141495 35.792542 32.700359