Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01208 ATGACATTTCAACGACTTATGGGTATTGCAAAAAGGAGATGTTTGGTTGTTTTTGTGATTCTCATATGTGCTTCTTTAGCAACTTGCTTTAAGGACCATGAGGAAGAGGAACTGATTCTGAGCCAACTAGCTGACCCAATTACTGGGGATGTCAATATAGAGATGGCTGAGCTGTTATTGGTGAAGTGCAACTTGGATTTCTTTCAGTTGAATGAAGATGTAGATGGTACTGATTCGTGCTCTGAAGAAAAACCGAGAAGCACAGATGGAATTAATTTCGAATGCCGAACGCTTGCAAAAGAAAAAACAAACAGAATGCTAAGTTCCATGCATCCCCAGATGAAGCAGGCTCTTTTAGATTGTGTAAGAAAGAATTTTCATGTCTCCGGGAGAGACTATAATTCTGAAGCTTGGTACACCCGATATCTGGAGTCATTGCTTTTTATGCCTGGTAGTTTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTGCTGAAGAAGAGCCCGCTCTGGCACCTGAGTCTTCAGATCCTGTATCTCCGCCCCGTCCTAAAAGAAAACCGTTTTTTCCACCAGATTCTGGAAATTCAAGTCGATCTTCAGGAGATGAAACTCCTGTAAGAAAAGCTTCTAGCACAGGTGGACAAAAGGAAAAGAAATCTAATCATCAGCAAACAGTTATTTTAGCTGTTGTCATAACAGCAACAGTGACTTTTATTATTGTAGCTTTGCTCTTTTTATGCTATAATAAGAGTGTTTCCAGAATGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGCTTAAGTTCTTCGCCCAAGTATTCTGCCTTTGGGAATTCTATTAAGGAAGACGCGCTCATCAATCAAGCATCTAACTTGAATCACCACCAGAGAGCTCCATCTTTGGATGGTAACCTGCACATTGTCTCCGATGGTGCACATACCTCAATGCAGGGACATCCAGCTTTTGGAGATGCTGGAATTGCCAATAACGCATCTTTTGAATCAACTTATATGGCTGATGGTACTACTGGCTTGGTGCCACTTCCTCCTGGAGCAGTGCCAGTCAACTCAGAGATTATACCACCTCTGAAGCCCCCTCCTGGCAGGGCTATTCCCCTTCCTCCCGGCAGGACTGTTCCCCTGCCTCCTGGCAAGAGTGTTCCCCTGCCTCCTGGCAAGAGTGTTCCCCTGCCTCCTGGCAGGGCTGCTGCTCCCCTTCCTCCTGAGCCCCCTTCCTCCTTTAAGTCACCATCCAGCATGAGTAGTTCTCCTCCTCCTCCACCTCCTGCACCTGGTGCTCCACCACCAGGACCTCCTGGAAATTCAGGTCGCCCTCCTGGACCCCCTCTACCTCCAGCATCTGGACCAGGCAACAAAGCAGGCCCTCCCCCACCACCACCTCCTAGAGGTGGTGGTGGTAGTGGTCCACCTCGACCACCACCTCCAGGAGCACCCAAAGGTGTAAATCCACCTCGACCTCCAAGACCTTTTGGACGTGATGATGAAGGTATGGACGAATCGGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCTGATGATTCCATGGTCTGGCATCAGATAAAAGCAGGATCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACACCAGTTGATAAAAACAAAAGTGAGGGAAAGAAGGAGGCATCATCACAAGATCCTGCGCACCAGTTCATTCAGATCATTGATTCAAAGAAAGCACAAAATTTGTCCATTCTTTTGCGGGCACTAAATGTGACAAAAGAAGAAGTTTGTGATGCGCTTCATGAAGGAGCTGAACTTCCTGCCGAACTTCTTGAAAACTTACTGAGGATGGCACCAACACCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTACTCAACTTGGAAATGCCGAGCGTTTCCTTAAAAGTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTCCAGGAGGACATCACCATCACTAAGGAGTCCTTTGTTAACTTGGAGATTGCTTGCAAGGAACTTCGGAGCAGCAGGCTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGAAACCGGATGAACGATGGAACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCAGATGTGAAAGGAAAAGATGGCAAGACTACGCTATTGCACTTTGTAGTCCAGGAGATAATTCGTACAGAAGGGATAAGAGCTGCGCGGAACGCCACAGGAAGCCATAGCTCCTCGAGCACCACATCAAATGATCTGCTGGATGAAACACCTGACGATGTGGAAGAGCATTACCGTACCCTTGGTCTTGAGGTCGTCTCAGGGTTAAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATAGATGCTGATGCCTTAACTGGAACTGTTTCCAAACTTGGGCATGCACTCTTAAAATCAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAGGAGAGTCAGTTTCACGAAACCCTGAAAAGCTTTTTGCAGAATGCTGAGGTTGCTATCATGGCCCTCTTGGCAGAAGAAAAAAAAATCATGGAAATGGTGAAAAGCACAGGTGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTCGTAATAGTGCGAGATTTCTTGGTAATGATAGATAAAACATGTCGAGAAATAAAGGATGCACAGAAGAAGCAGATGAAGGTACAAAAACAGGCAGTATCTTCTGATAGCAATCACCCCCCTTCAACTCCAGTTCCCTCTGATCCTCCTGCTGATCTTCCCCCTGTTCCTCCCGCTGATCGCCCCCCCGTTCCTCCCGCTGATCTTCCCCCTTCAACACCAGTTCCCTCTGATCTTCCCTCTGATCGTCCCCCCGTACCTCCTGCTGATCTTCCCCCTTCAACTCCAGTTCCCCCTGTTCCTCCCACTGATCTTCCCCCTTCAACTCCAGTTCCCTCTGCTCCTCCTCCCCCTTCAACTTCAGTTCCCTCTGCTCCGCCTCCCCCTTCAACTCCAGCTCCCTCTGCTCCTCCTCCCCCTTCAACCCCAGCTCCCTCTGCTCCTCCTCCCCCTTCAACCCCAGCTCCCTCTGCTCCTCCTCCCCCTTCAACTCCAGTTCCCTCTGCTGCTCCTCCCCCTTCAACTCCAGTTCCCTCTGCTCCTCCTCCCCCTTCAACTCCAGTTCCCGCTGCTCTTCCCCCTGTTCGTCCCCCTGATCTACGACACACGCCTTCTGCCGATCTGAATCAACTGATCTTCCCAGCAATTACTGATCGTAGGATCAGTGACTCAAGTTCAGATGAGGAGAGTCCATAG 3408 47.62 MTFQRLMGIAKRRCLVVFVILICASLATCFKDHEEEELILSQLADPITGDVNIEMAELLLVKCNLDFFQLNEDVDGTDSCSEEKPRSTDGINFECRTLAKEKTNRMLSSMHPQMKQALLDCVRKNFHVSGRDYNSEAWYTRYLESLLFMPGSFRRKLSSRWLRSAEEEPALAPESSDPVSPPRPKRKPFFPPDSGNSSRSSGDETPVRKASSTGGQKEKKSNHQQTVILAVVITATVTFIIVALLFLCYNKSVSRMKQNDENHERPLLSLSLSSSPKYSAFGNSIKEDALINQASNLNHHQRAPSLDGNLHIVSDGAHTSMQGHPAFGDAGIANNASFESTYMADGTTGLVPLPPGAVPVNSEIIPPLKPPPGRAIPLPPGRTVPLPPGKSVPLPPGKSVPLPPGRAAAPLPPEPPSSFKSPSSMSSSPPPPPPAPGAPPPGPPGNSGRPPGPPLPPASGPGNKAGPPPPPPPRGGGGSGPPRPPPPGAPKGVNPPRPPRPFGRDDEGMDESGVPKAKLKPFFWDKVLANPDDSMVWHQIKAGSFQFNEEMIETLFGYTPVDKNKSEGKKEASSQDPAHQFIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGAELPAELLENLLRMAPTPEEELKLRLFSGELTQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFVNLEIACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNATGSHSSSSTTSNDLLDETPDDVEEHYRTLGLEVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKSRDFLNKDMQGLGEESQFHETLKSFLQNAEVAIMALLAEEKKIMEMVKSTGDYFHGNAGKDEGLRLFVIVRDFLVMIDKTCREIKDAQKKQMKVQKQAVSSDSNHPPSTPVPSDPPADLPPVPPADRPPVPPADLPPSTPVPSDLPSDRPPVPPADLPPSTPVPPVPPTDLPPSTPVPSAPPPPSTSVPSAPPPPSTPAPSAPPPPSTPAPSAPPPPSTPAPSAPPPPSTPVPSAAPPPSTPVPSAPPPPSTPVPAALPPVRPPDLRHTPSADLNQLIFPAITDRRISDSSSDEESP 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9769759 9776962 + CmoCh01G012080.1 Cmo01g01208 374691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01208 1135 SMART it6_source 509 930 IPR015425 -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 364 515 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 166 223 - -
Cmo01g01208 1135 Coils Coil 915 935 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 193 223 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 931 945 - -
Cmo01g01208 1135 Pfam Formin Homology 2 Domain 515 914 IPR015425 -
Cmo01g01208 1135 ProSiteProfiles Formin homology-2 (FH2) domain profile. 509 941 IPR015425 -
Cmo01g01208 1135 PANTHER FORMIN-RELATED 11 422 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo01g01208 1135 PANTHER FORMIN-RELATED 422 941 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 175 189 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 946 1104 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 364 499 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 500 514 - -
Cmo01g01208 1135 SUPERFAMILY Formin homology 2 domain (FH2 domain) 580 936 - -
Cmo01g01208 1135 MobiDBLite consensus disorder prediction 926 1135 - -
Cmo01g01208 1135 PANTHER FORMIN-LIKE PROTEIN 3 11 422 - -
Cmo01g01208 1135 PANTHER FORMIN-LIKE PROTEIN 3 422 941 - -
Cmo01g01208 1135 Gene3D Formin, FH2 domain 514 943 IPR042201 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01208 Cmo09g00918 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01208 Cmo-Chr1:9769759 Cmo02g00543 Cmo-Chr2:3081604 3.91E-122 dispersed
Cmo01g01208 Cmo-Chr1:9769759 Cmo02g00150 Cmo-Chr2:734161 0 wgd
Cmo01g01208 Cmo-Chr1:9769759 Cmo09g00918 Cmo-Chr9:4786856 4.54E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01208 - - cmos:111446349 837.41