Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01211 ATGAAAGTTTTTGAAGTTTGGAGAAAAATGCCAACAGTTTGGTGGTTTTCTTTGAAAAAGTCCTTCCCCTGCAAACCAGAGCCATCAGAAGTCTATGATCCAAAGAGCAGGAAACAACTCAACACAATCACAACCAAGAAAGCAGCCAATAAGTCAGGGTGTTCTTCTGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGACACATGGAGAATCCACCGATTTGTAGCCCGAGATCGATCGGTAGCAGCGAGTTTCTCAACCCGATTGCTCATGAAGTAATACTCAGCAACTCTAAGTGTGAGCTCAAGATCACTGGTTTTGGTGGCTTACACTTAGAGGGTGTGGGAAATTCTGGCTTTGGAGGAGGTGGGGGCGGAGATTCGCCGTTTTTTGGTACTCTTAGGCCCGGAACTCCCGGTCCGGGGGAGAACTTTGCTATCAACTCCAACTCCATGACTTCTGCAAGAAAGCTTCCTTCTCCTTTATCTTATAGGGATGCCTCTCCAGCTGGGAGTGCTGCCAAATTTAAGGGGGGTGGGGAAGTTCATACAAGCAAAAGGTTCTCGCCGTTAATCAAGTCGAACGATACGACGTTTTCGGCAGTTACTTGCCATAAATGTGGAGAACAGTTCTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCCAAGCATGCTGTTACTGAGCTTGTGGAGGGCGATTCATCGAGGAAAATCGTCGAAATGATATGTCAAACTAACTTTTCAAAGTCGGAGAACAATGGAAACCGAATCGAACGAGTTTTCAAAGTTCACAATATGCAGAAAAAATTAGCAGGATTTGAAGAATACAGAGAAACAGTGAAGATCAAAGCAAGCAAGCTCTCAAAGAAACACCCTCGATGCCTCGTCGATGGGAACGAGCTATTGAGGTTTTTCGGGACGACGTTAGCCTGCTCACTTGGACTAAATGGCTCCACCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATCATAAGGAATGGTTTCTCAGAAAAGAAGGATATGAAAGAAGTAGGAGTTTTTACGACTTCAACGAGCGGAAAAGCTTTTGAAACCATCGAAACGGAGAACGAAAGCTCGGTGAAGAAAGCATTGATAATCTGTAGAGTGATAGCTGGGAGAGTTCATAGGCCATTGGAGAACATACAAGATATTGTTGGGCAAACAGGGTTTGATTCTTTGGCTGGCAAAGTGGGATTACATTCCAACATTCAAGAGCTTTATTTGCTTAATCGTAGAGCTTTGCTTCCTTGTTTTGTTGTAATTTTCAAACCATGA 1335 44.12 MKVFEVWRKMPTVWWFSLKKSFPCKPEPSEVYDPKSRKQLNTITTKKAANKSGCSSGRSGCSRSIANLKDVIHGSKRHMENPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGGLHLEGVGNSGFGGGGGGDSPFFGTLRPGTPGPGENFAINSNSMTSARKLPSPLSYRDASPAGSAAKFKGGGEVHTSKRFSPLIKSNDTTFSAVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEMICQTNFSKSENNGNRIERVFKVHNMQKKLAGFEEYRETVKIKASKLSKKHPRCLVDGNELLRFFGTTLACSLGLNGSTSLCISQKCNVCRIIRNGFSEKKDMKEVGVFTTSTSGKAFETIETENESSVKKALIICRVIAGRVHRPLENIQDIVGQTGFDSLAGKVGLHSNIQELYLLNRRALLPCFVVIFKP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9781096 9782597 + CmoCh01G012110.1 Cmo01g01211 374694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01211 444 SUPERFAMILY ADP-ribosylation 237 443 - -
Cmo01g01211 444 ProSitePatterns Zinc finger C2H2 type domain signature. 214 235 IPR013087 -
Cmo01g01211 444 PANTHER - 12 444 - -
Cmo01g01211 444 Gene3D - 240 443 - -
Cmo01g01211 444 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 444 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01211 Cmo09g00914 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01211 Cmo-Chr1:9781096 Cmo15g00715 Cmo-Chr15:3476055 1.33E-70 dispersed
Cmo16g00873 Cmo-Chr16:4681672 Cmo01g01211 Cmo-Chr1:9781096 2.77E-178 transposed
Cmo01g01211 Cmo-Chr1:9781096 Cmo03g00531 Cmo-Chr3:5429382 4.25E-60 wgd
Cmo01g01211 Cmo-Chr1:9781096 Cmo09g00914 Cmo-Chr9:4781899 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01211 - - csv:101213316 727.628