Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01220 ATGAATTCGTCTCGGCTTGAAGCTTGCAGATCGGATGTTCAGGAACGAATTTCTGACGAAGAACCACCCCTGATTTCAGGTTCTTTCTTCCCCTTCTTAGCTATGAAACGAGGATACTCAGAATCCCCATCGGCGTCTTTGGGGCCACCTCAATCCAGATTCAAGCACAACCCAGAAGGCGATACTGAGTTCTTAGAAGATGAAACCACCAAAATTTTTGCTCGGAAAGTGGCTGATCATTACAGTGCTAGGACAAATCAGACTTTGGAAGAGCGAGAGGCTAGTGTTATCATCCATTTAAAAAAGCTTAACAATTGGATTAAGAGTGTCTTGGTTCAGCTTTATGCTCGTCGAGGAGATGCCGTTCTCGACCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGATAAGGCCAGAATTGGATATTATGTTGGCATTGATATAGCTGAAGGATCAATAGAAGATTGTCGTACTCGTTACAATGGTGACGCTGATCATCATCAACGTCGTAAAAAATTTTCGTTCCCTGCCCGCCTCATATGTGGAGATTGTTATGAGGCAAGGCTGGATCATATCCTAGCAGATGATGCTCCATTCGACATTTGCAGTTGCCAGTTTGCATTGCATTATTCTTGGTCCACCGAGGCTCGTGCACGACGTGCCTTGGCCAATATATCAGCTCTTCTCCGCCCAGGAGGTATTCTCATTGGAACCATGCCAGATGCTAACGTGATCGTCAAAAAGCTTAGAGAAGCTCAAGGCTTGACGTTTGGAAATAGCGTCTATTGGATACGCTTTGATGAAGAACATGCCGAAAAGAAATTTAACGCTTCCAGCCCGTTTGGTATAAAGTACTTGTTTCATCTAGAGGATGCTGTTGATTGCCCTGAATGGATCGTCCCTTTTCATGTTTTTAAATCATTGGCTGAAGAGTATGACTTAGAGTTGGTTTTTGTCAAGAACTCGCATGAATTCGTGCACGAGTACTTGAAAAAACCCGAATTCGTCGATCTAATGCGACGGCTTGGTGCCTTGGGTGATGGCAACCAAGATCAAAGCACGTTATCTCCAGACGAGTGGGAAGTGGCATATCTCTACCTTTCATTTGTCTTGAAAAAGCGAGGCCAACCCGACCGAGCACATGCACCGAATAGACGAGACAGAGGGCAAATGCAAATAGCAAAAGGGGACATAATGTACATAACTGACCAGTAG 1218 44.83 MNSSRLEACRSDVQERISDEEPPLISGSFFPFLAMKRGYSESPSASLGPPQSRFKHNPEGDTEFLEDETTKIFARKVADHYSARTNQTLEEREASVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHILADDAPFDICSCQFALHYSWSTEARARRALANISALLRPGGILIGTMPDANVIVKKLREAQGLTFGNSVYWIRFDEEHAEKKFNASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYDLELVFVKNSHEFVHEYLKKPEFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLKKRGQPDRAHAPNRRDRGQMQIAKGDIMYITDQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9816246 9822766 + CmoCh01G012200.1 Cmo01g01220 374703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01220 405 Gene3D Vaccinia Virus protein VP39 93 376 IPR029063 -
Cmo01g01220 405 PANTHER MRNA CAP GUANINE-N7 METHYLTRANSFERASE 35 401 - -
Cmo01g01220 405 CDD AdoMet_MTases 122 237 - -
Cmo01g01220 405 Pfam mRNA capping enzyme 66 375 IPR004971 -
Cmo01g01220 405 MobiDBLite consensus disorder prediction 41 60 - -
Cmo01g01220 405 ProSiteProfiles mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 56 381 IPR004971 -
Cmo01g01220 405 PANTHER MRNA GUANINE-7- METHYLTRANSFERASE 35 401 IPR039753 GO:0004482
Cmo01g01220 405 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 104 374 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01220 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] - csv:101217782 720.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01220 Cmo-Chr1:9816246 Cmo18g00931 Cmo-Chr18:10474662 3.97E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g391 . . . . . . . . . . Cma01g01165 . . . . . Cpe02g00737 Bhi09g01965 Tan01g4483 . . Hepe01g1328 . . . . . . . . . . Cone9ag0116 . . Lsi04g01258 . Chy04g01032 . . . . . Bpe11g00516 . . Bma14g00368 . Cmo01g01220 . . . . Car16g00578 . . . . . . . . . Cla05g01557 Cam05g1664 Cec05g1669 Cco05g1709 Clacu05g1659 Cmu05g1552 Cre05g1664 . . . Cme04g00774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004967 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01220 Cmo_Chr01 FPKM 9.26843 12.426264 16.682232 19.143953 9.384368 12.3996 12.916965 36.85202 40.533768 44.301804