Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01224 ATGGGTAATCTTCCTCTGCTATCTTTTGTTATGACCCTGTTCTTATATTCATCTTTCAATATCTCATCGGCTGTTGATTTCTTAACCCCTTCTCAAACCCTCAGCGATGGCAACACCCTGGTCTCGGAAAATGGGTATTTCGAGATGGGTTTCTTCAGTCCTGGAAATCCCATGAATCGTTACTTGGGAATTTGGTACAAAATCATCCCGATTCCCACTGTGATTTGGGTCGCCAATCGAGAAGCCCCGATCAAGGATCTTCATGGTGTTCTAAGAATCAACACCACAGCCAGTGAAATCACTCTCACCCAGAATGATGATCTTGTTGTTTGGTCAGCAAAATCGTTAAAACCAGTGGAAAATCCCAGACTGCAACTCCTGGATTCTGGGAATTTGGTCCTGAAAAATGGGAACTCGGAGGTGTTCTTATGGGAAAGCTTTGATTATCCAACGGATACATTGTTGCCAGGAATGAAGCTGGGATGGGATTATAAAACTGGCTTGAACAGAAGATTATCCGCTTGGAAAAACTGGGACGACCCATCTCCTGGAACATTGACCATGGAAATGGAGAATCATAGCTACCCAGAACCCGCCATGTGGAATGGTACTCAAGAGTTCATGAGATCCGGACCTTGGAATGGGATTCGATACAGCGCCAAACCCTTCACCGCTTTCCCAATTTTCGTCTTCCATTACACGAAGAACAAAGATGAGGTTTATTACAGCTACCAGTTGATTAATCAATCAATGATTGGAAGAATGGTGTTGAATCAATCCAAGTTCAAGAGAGAGGCTCTGTTGTGGTCGGAAGCTGAGAAGAACTGGAAGGTATACGCCTCAATACCGAGGGAGTACTGCGATACGTACAATTTTTGTGGTGCTTTTGGGAGCTGCAACATTGAGAGCATGCCTTCTTGTAAATGTTTAAAAGGGTTTAAGCCAAAGGTGCCTGAGAGATGGAATTTGATGGATTATACAGAAGGGTGTGTTAGAAATAGGCCTCTTAATTGCTTGGATGAAGTGGGGTTTGCTAAGTTTGTGGGGATGAAATTGCCTGACACTAAATTTTCTTGGGTTAATGAAAGCATGAGGTTAGATGAGTGCAGGGAGATGTGCTTGAGGAATTGTTCTTGTATGGCGTTTGCTAATACTGATATTAGAGGATCAGGCAGTGGTTGTGTCATTTGGGTTGGTGAGCTTGTTGATATTCCTGTGATTCTTAAAGGTGGACAAGATTTGTATGTTAAAGTACTTGCTTCTGAGTTAGAGACAAAGAAGAAGAGCTCGTTGACCATAGTTGTAGTTTTAGCTGCTGCTCTCATTGTTGCTGCCCTGCTTTTGGTCGGATTTTACGTTGTTCGAAGCAGGAAACACCTCAGAGGTAAGAAGCTTGAAGTGCAAGAGGAAAGCATGGAGCTTCCATTATATGACTTATCAACAATATCACATTCGACAGACAATTTCTCAAACTCCAACAAGCTTGGAGAAGGCGGTTTTGGTGCTGTCTTCTGGGGTAGGCTTCCAAACGGACAAGAAATTGCAGTAAAAAGGCTGTCCAACCAGTCAAGACAGGGCATGGATGAGTTCATGAATGAAGTAAAACTTATAGCCAAACTTCAGCACAGAAACCTTGTAAAGCTTCTGGGTTGCTGCATTCAAGGGGAAGAAAAGATGTTGGTCTATGAATACATGCCTAATAACAGCTTGGATTCCTTCATATTTGATTTGGCGGGAAGGAAGCTTTTGGATTGGTCGAAGCGATTCAACATCATATGTGGAATAGCGAGAGGGATTCTTTACCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATCTCAAACCGAGTAATATCTTGCTTGATACTGATATGATCCCGAAAATCTCGGATTTTGGAATGGCTAGAACTTTTGGTGGCGATCAGATTGAAGGAAACACTAAGAGAGTAGTTGGAACGTACGGGTATATGGCACCGGAATACGCTATCAATGGACAATTTTCTATCAAGTCTGATGTATTCAGCTTTGGGGTTTTAGTGTTGGAGATTATAAGTGGAGAGAAAAATAAGGGGTTTCATCGTTCAAATCACGCTCTCAATCTTATTGGTCATGTATGGAGATTATGGAAGGAAGGAAGACCATTAGAGTTTATTGATACATCCATTACGAACTTGTACGCTCCATCTGAAGTATTGCGATGCATCCATATTAGCCTTCTGTGCTTGCAAAAACATCCCGAGGATAGACCGACTATGTCAAATGTGGTTCTAATGCTAAGTAGTGATGGTGCGTTGGTGCAACCGAAACAACCTGGATTATACGTTGAAGGAGACTCACTTGAAGCCCGTTCTTTTTCAAATGAAAATGAATTTCTTACTACTAATGAGTTAACTATTACCCATTTGGAGGCGAGATAA 2421 41.97 MGNLPLLSFVMTLFLYSSFNISSAVDFLTPSQTLSDGNTLVSENGYFEMGFFSPGNPMNRYLGIWYKIIPIPTVIWVANREAPIKDLHGVLRINTTASEITLTQNDDLVVWSAKSLKPVENPRLQLLDSGNLVLKNGNSEVFLWESFDYPTDTLLPGMKLGWDYKTGLNRRLSAWKNWDDPSPGTLTMEMENHSYPEPAMWNGTQEFMRSGPWNGIRYSAKPFTAFPIFVFHYTKNKDEVYYSYQLINQSMIGRMVLNQSKFKREALLWSEAEKNWKVYASIPREYCDTYNFCGAFGSCNIESMPSCKCLKGFKPKVPERWNLMDYTEGCVRNRPLNCLDEVGFAKFVGMKLPDTKFSWVNESMRLDECREMCLRNCSCMAFANTDIRGSGSGCVIWVGELVDIPVILKGGQDLYVKVLASELETKKKSSLTIVVVLAAALIVAALLLVGFYVVRSRKHLRGKKLEVQEESMELPLYDLSTISHSTDNFSNSNKLGEGGFGAVFWGRLPNGQEIAVKRLSNQSRQGMDEFMNEVKLIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNNSLDSFIFDLAGRKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKPSNILLDTDMIPKISDFGMARTFGGDQIEGNTKRVVGTYGYMAPEYAINGQFSIKSDVFSFGVLVLEIISGEKNKGFHRSNHALNLIGHVWRLWKEGRPLEFIDTSITNLYAPSEVLRCIHISLLCLQKHPEDRPTMSNVVLMLSSDGALVQPKQPGLYVEGDSLEARSFSNENEFLTTNELTITHLEAR 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9834744 9839013 - CmoCh01G012240.1 Cmo01g01224 374707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01224 806 Gene3D - 20 147 IPR036426 -
Cmo01g01224 806 CDD STKc_IRAK 495 760 - -
Cmo01g01224 806 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Cmo01g01224 806 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Cmo01g01224 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 181 IPR036426 -
Cmo01g01224 806 SMART ntp_6 339 418 IPR003609 -
Cmo01g01224 806 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Cmo01g01224 806 ProSiteProfiles Protein kinase domain profile. 489 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01224 806 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 803 - -
Cmo01g01224 806 Pfam PAN-like domain 342 404 IPR003609 -
Cmo01g01224 806 SMART serkin_6 489 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01224 806 Gene3D Hepatocyte Growth Factor 336 417 - -
Cmo01g01224 806 Pfam Domain of unknown function (DUF3403) 761 806 IPR021820 GO:0004674
Cmo01g01224 806 CDD PAN_AP_plant 335 418 - -
Cmo01g01224 806 Pfam D-mannose binding lectin 73 176 IPR001480 -
Cmo01g01224 806 SUPERFAMILY Protein kinase-like (PK-like) 470 760 IPR011009 -
Cmo01g01224 806 CDD B_lectin 31 150 IPR001480 -
Cmo01g01224 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cmo01g01224 806 Gene3D Phosphorylase Kinase; domain 1 463 564 - -
Cmo01g01224 806 Gene3D Transferase(Phosphotransferase) domain 1 565 768 - -
Cmo01g01224 806 PIRSF SRK 2 806 IPR024171 GO:0004674
Cmo01g01224 806 Pfam Protein tyrosine and serine/threonine kinase 492 758 IPR001245 GO:0004672|GO:0006468
Cmo01g01224 806 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Cmo01g01224 806 SMART blect_4 31 150 IPR001480 -
Cmo01g01224 806 PANTHER - 24 803 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01224 Cmo-Chr1:9834744 Cmo16g00870 Cmo-Chr16:4644745 0 dispersed
Cmo04g00059 Cmo-Chr4:326522 Cmo01g01224 Cmo-Chr1:9834744 2.64E-103 dispersed
Cmo01g01224 Cmo-Chr1:9834744 Cmo01g01225 Cmo-Chr1:9840485 0 tandem
Cmo01g01224 Cmo-Chr1:9834744 Cmo18g00314 Cmo-Chr18:2010095 0 wgd
Cmo01g01224 Cmo-Chr1:9834744 Cmo19g00983 Cmo-Chr19:8830134 1.04E-155 wgd
Cmo01g01224 Cmo-Chr1:9834744 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74047 PF07714 PK_Tyr_Ser-Thr 7.00E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01224 - - cpep:111785739 1308.51