Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01225 ATGAAATTCAATGCTCTTATACAACTCCGCGGAAGAACACCCTTTCCATTTATCAAATTACAGACAAAATCCAATGCAAAAATGGTAAATCTCTCTCTACTTCTGTTTCTATTTGTTTTTCTCTTCTCTCCGCCGTCTCTGGCGGTTGATATCTTAACCCCATCTCAAAACCTCACCAACGCCGCCACTTTCGTCTCGGAAAAAGGGTTTTCCGAGCAAACCCCAAGAAATTTCACGAACCCTTTTTTCGGAATCTGGCACAACAACCTCATCACGATTCGCCGAATCGATTACCCAACGGACCCATTACTCCGCCGAAACGGAATCCACCGTCGATTATCCGCCGGAAAAACCCCCGACGACCTAGAACCGGCGATGTGGAAAGGCTCGAAGGAGCTCATGAGAAGCGAGGCTTTGCACCAGTCGGTACCAGGGGATTACTGCGACACGTACGGTCTCTGCGGCGCATTTGGGAGCTGCGACATCGAGCAAATGCCGGCGTGTCAATGCTTAAAAGGGTTTCATCCCAAAGTGCAGGAGAAGTGGAATTTGATGGATTACACAGATGGGTGTGTTAGAAATCGGTCATTGAATTGCTCTACTGATATAATCGGGTTCGCAAAGTTGCCTGGGCTCAAACTTCCAGACATGAACATGTCGTGGGTGAATGAGAGCATGAGCTTGAGTGAGTGCAGGGACAAGTGTTCGAGGAACTGTTCTTGTGTAGCGTTTGCAAACGCTGTGGCTCGTGGCTCAGGGAGTGGCTGTGCCATTTGGGTTGGGGATCTTGTTGATATCAAAGTGGTTCGAGGTGGAGGCCAGGATTTGTATATTAGAATGTTGGCTTCTGAACTGGAGACGACGAAGAAGAAGAGCTCGGTTGTCGTCGGCGTTATCGTCGTCGCAGCCGTTGTCGTGGTTGCTGGTTTGGTTCTTGTTGGGTTTTACATTAGGAGGAGGAGGAGGAGAAGAAGCCATGAAAGTAAGGATGTAGAAGCGCAAGAACAAGACTTGGAGCTTCCATTACTTGACTTACTGACAATATCTACTGCCACAGACAATTTCTCAGCCTCCAATAAACTTGGAGAAGGTGGTTTCGGCGCGGTTTTTCGGGGTAGACTTGCAACTGGACAAGAAATTGCAGTAAAGAGGCTTGCTAGCTATTCGAGACAAGGAACGGATGAATTCAAAAACGAAGTGATACTCATTGCTAAACTTCAACATCGAAATCTCGTGAAGCTTTTGGGTTGTTGTATCCAAGGGGAGGAAAAGATGTTGATTTACGAGTACATGCCTAATAAGAGTTTGGACTTCTTCATATTTGACCCGGCTCGAAGAAAGCTTTTAGATTGGTCTAAAAGATTCAATATCATATGCGGAGTAGCTAGAGGGCTTCTTTATCTTCATCAGGATTCGAGGTTGAGGATTATACATAGGGATTTAAAAGCAAGTAATGTCTTGCTTGATGTTGATATGAACCCAAAAATCTCGGATTTTGGAATGGCTAAGACGTTTGGAGGGGATCAAACCAAAGGAAATACGAGGAGAGTTGTTGGAACGTATGGGTATATGGCACCCGAATACGCCATTGATGGACAATTCTCCGTTAAGTCCGACGTTTTCAGTTTTGGTATTTTGTTGTTGGAGATCATATGTGGAGAGAAGAACCGAGGTTTTTATCGTCCCAATCATGCTCTCAACCTTATTGGACATGCATGGAAGTTATGGAACGAAGGAAAGCCGTTAGAGTTGATTGATGCGACTATTGGAGACTCTTATTCTTTATCTGAAGTGGTTCGATGCATCCATGTTAGCCTTTTGTGCTTACAACAACAACCCGAGGATAGACCAACTATGTCGAATGTGGTCCTAATGCTAAGTAGTGAGAGCGTCTTAGCACAACCAAAACAGCCGGGATTCTACATGGAAAGAGATTCTCTTAAAGCAGATTCTATTTCGGGCAAGAATGAATCTTCAACTACCAATGAATTAACGATTTCCCTAATGGAAGCTAGATAG 2019 44.87 MKFNALIQLRGRTPFPFIKLQTKSNAKMVNLSLLLFLFVFLFSPPSLAVDILTPSQNLTNAATFVSEKGFSEQTPRNFTNPFFGIWHNNLITIRRIDYPTDPLLRRNGIHRRLSAGKTPDDLEPAMWKGSKELMRSEALHQSVPGDYCDTYGLCGAFGSCDIEQMPACQCLKGFHPKVQEKWNLMDYTDGCVRNRSLNCSTDIIGFAKLPGLKLPDMNMSWVNESMSLSECRDKCSRNCSCVAFANAVARGSGSGCAIWVGDLVDIKVVRGGGQDLYIRMLASELETTKKKSSVVVGVIVVAAVVVVAGLVLVGFYIRRRRRRRSHESKDVEAQEQDLELPLLDLLTISTATDNFSASNKLGEGGFGAVFRGRLATGQEIAVKRLASYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDFFIFDPARRKLLDWSKRFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDVDMNPKISDFGMAKTFGGDQTKGNTRRVVGTYGYMAPEYAIDGQFSVKSDVFSFGILLLEIICGEKNRGFYRPNHALNLIGHAWKLWNEGKPLELIDATIGDSYSLSEVVRCIHVSLLCLQQQPEDRPTMSNVVLMLSSESVLAQPKQPGFYMERDSLKADSISGKNESSTTNELTISLMEAR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9840485 9843370 - CmoCh01G012250.1 Cmo01g01225 374708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01225 672 PANTHER - 132 669 - -
Cmo01g01225 672 MobiDBLite consensus disorder prediction 651 672 - -
Cmo01g01225 672 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Cmo01g01225 672 SUPERFAMILY Protein kinase-like (PK-like) 339 626 IPR011009 -
Cmo01g01225 672 CDD PAN_AP_plant 197 279 - -
Cmo01g01225 672 ProSiteProfiles PAN/Apple domain profile. 199 281 IPR003609 -
Cmo01g01225 672 MobiDBLite consensus disorder prediction 652 672 - -
Cmo01g01225 672 SMART ntp_6 201 280 IPR003609 -
Cmo01g01225 672 Pfam Domain of unknown function (DUF3403) 627 672 IPR021820 GO:0004674
Cmo01g01225 672 Gene3D Transferase(Phosphotransferase) domain 1 431 638 - -
Cmo01g01225 672 Gene3D Phosphorylase Kinase; domain 1 315 430 - -
Cmo01g01225 672 Pfam S-locus glycoprotein domain 138 177 IPR000858 GO:0048544
Cmo01g01225 672 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 132 669 - -
Cmo01g01225 672 SMART serkin_6 355 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01225 672 Pfam PAN-like domain 205 266 IPR003609 -
Cmo01g01225 672 Pfam Protein tyrosine and serine/threonine kinase 357 624 IPR001245 GO:0004672|GO:0006468
Cmo01g01225 672 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01225 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01225 Cmo-Chr1:9840485 Cmo09g00901 Cmo-Chr9:4698818 3.44E-06 dispersed
Cmo01g01224 Cmo-Chr1:9834744 Cmo01g01225 Cmo-Chr1:9840485 0 tandem
Cmo01g01225 Cmo-Chr1:9840485 Cmo13g00708 Cmo-Chr13:7182329 5.01E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74048 PF07714 PK_Tyr_Ser-Thr 7.30E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01225 - - cmos:111446489 1292.72