Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01226 ATGATGAAGTGCGAGCTGTGTGGGCAGCTAGCGAGGACTTTCTGTGAGTCCGATCGGGCGAACCTATGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAGCATTCTAGGAGTCTTCTATGTCGTGCGTGTCAGTCGCCGACTCCATGGACGGCATCTGGTCGGAAGCTTACGCCTACGGTTTCTGTGTGTGAGGGATGTGTTGAAGTCCATTGTGGTAAATGGGAGCAAGGTGGATTTCAAGAGCGCCGTAGAGATAACGAGGTGGAAGTTAATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGGGAGTTATGAGGGAGGTGATAGTGAGGATGCTGATGAGGATGACGATGAGGAGGAGGAGGAGGAGGAGGAAGCAGAAGAGGATGAAGATGGAGAAAACCAGGTGGTTCCGTGGTCTTGTGCGTCTTCTTCGACGCCACCACCACCACCGACAGTGACTTCTAGCAGCGAGGGCGAGATGTCAGCTTGCGCTGGTGGCGTATCGAAGCGGAGGAGAGAGTACGACGTCGATCTCGATTCCGATGACGAATTCGAGTGTTCTTCTGCTCAACAAGGAACCAGGCCTTCTTACAACGACGAAGCGACTTCCTCTACTTCCCACAGGCCACCGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCAGCATCATCCCCGATGATGAAGCTCGTAAAGCAGATTTAAAATCCACAGCTGTCATTAGATCGATCCAGAGTCTCCAGAATCGTCTGCCCACCGGTATCAACGATGCTTCCAAACTGATTTTTGGGATATGCAAAATTAGCAGAGATCAGAATCGTTGA 849 51.0 MMKCELCGQLARTFCESDRANLCWDCDEKVHCANFLVAKHSRSLLCRACQSPTPWTASGRKLTPTVSVCEGCVEVHCGKWEQGGFQERRRDNEVEVNGGDDFDDGEGFGSYEGGDSEDADEDDDEEEEEEEEAEEDEDGENQVVPWSCASSSTPPPPPTVTSSSEGEMSACAGGVSKRRREYDVDLDSDDEFECSSAQQGTRPSYNDEATSSTSHRPPKQARVTGPTQSASIIPDDEARKADLKSTAVIRSIQSLQNRLPTGINDASKLIFGICKISRDQNR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9848866 9850854 + CmoCh01G012260.1 Cmo01g01226 374709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01226 282 MobiDBLite consensus disorder prediction 88 238 - -
Cmo01g01226 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 231 - -
Cmo01g01226 282 MobiDBLite consensus disorder prediction 193 231 - -
Cmo01g01226 282 Coils Coil 116 136 - -
Cmo01g01226 282 MobiDBLite consensus disorder prediction 97 141 - -
Cmo01g01226 282 CDD Bbox1_BBX-like 3 45 - -
Cmo01g01226 282 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cmo01g01226 282 PANTHER OS08G0178800 PROTEIN 1 231 - -
Cmo01g01226 282 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Cmo01g01226 282 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01226 - - - bhj:120086748 380.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01226 Cmo-Chr1:9848866 Cmo11g01914 Cmo-Chr11:13299106 1.29E-12 dispersed
Cmo01g01226 Cmo-Chr1:9848866 Cmo18g00316 Cmo-Chr18:2036445 9.19E-34 wgd
Cmo01g01226 Cmo-Chr1:9848866 Cmo03g00523 Cmo-Chr3:5395920 1.49E-25 wgd
Cmo01g01226 Cmo-Chr1:9848866 Cmo09g00899 Cmo-Chr9:4688014 3.42E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01226 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9096 PF00643 zf-B_box 3.20E-05 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01226 Cmo_Chr01 FPKM 0.0 0.0 0.724773 0.0 3.87368 3.168145 3.075634 0.0 0.0 0.0