Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01236 ATGATGTTATCGCCATCGCCTTCGACGATAGCTCGGAGTTCACTCGAGGAAATGCTCGATTCGCTTCGACGAAGGGATGAGATTGATAAGCCTAAAGATGCGCCCCCTGCATTGCCGTCTCGACCCACTTCGAAGGCTCGGACTCCCCCGGTGGGACGGGCTTTACCTGTCAATTTCAGGGTTAATGTTGATGGCTCCTCTGGCTGCTCTATTAATGGCTTCAATGGAAGGGAAGATGTAATGAGAAAGGAGAATCGTTTGGGTAACTTTGCATTCAAGAGATTGAATAGAGATCAAGATGAGGAATCGCCTTACATATTAGCTTCAGAAAATGAAAATGGAGATCGAATGAATGGTTCGAATCTTCGTGGGTCTTATTGGGAGGACAATATCGGTTATTTTCTTCAGAAGAAACTCCATGTTTGGTGTCAACTTCCAAATGGACAATGGGAGTTAGGAACCATACAGTCGAGCACTGGGGCGGAGGCATCTGTCATGCTTTCGAACAAAAAGGTTATTAAAATTTCGACCGTAGATCTTTTACCTGCCAACCCAGATATCATCGAGGGGGTTGATGATCTTGTACAGCTTGGTTTTCTGAACGAGCCTTCGGTTCTTCACAGTCTCCATCGAAGATTTTCTCAGGATAAGATTTATAGTAACGCAGGGTCGGTTTTGATAGCATTCAACCCCTTGAAAGACATTAAACAGTATGGAAAAGAATTTATTGAAGCCTACAGACAGAGAGTCATAAACAACCCTCATGTTTATGCTACAACAGATGCTGCTTATTCTGGGATGTTAAGAGATGAAGTTAATCAATCCATTATCATCAGCGGCGAAAGTGGAGCGGGAAAAACGGAGACAGCAAAAGCTGTGCTTGAATACTTGACTTCTCTCGGTGGTGTCAGTGGCATAGATGACAGAATTTCTCGAGCGAATGTTATACTCGAAGCATTCGGGAATGCAAAAACCTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAACTCTCTTTAGCAGAACAGGGAAGATATGTGGTGCTTCGAGAGTCGTTCGCCTGGTTAATGGCGAAAGATCATTCCACGTCTTCTATCAACTTTGTGCTGGACTACCATCTAGACTTAAAGAGAAATTTAATATCAGAGCGGCCAGTGAGTACAGTTACCTCAATCACAGTGAATGCCTGGTGATTGGTGGTGTCGATGATGCACGGAAATTTAACATTCTTGTGGAAGCCTTAGACACACTTCAATTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCAGTTTTGTGGATAGGGAACATTACGTTTCAAATAATTGATAGCGAAAATCATGTAGAGGTCATAGCTAATGAAGCGGTTGCAAATGCTGCCAAGTTGATGGGCTGCAGTTTTAATGAGCTGAAGTTAGTTTTATCAACCCACAAAGAGCAATCTGGCAAGGATAGCATTGCTAAAAAATCGACATTACAACAGGCTACTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCGCTTCAACCAGGAAGGGAGTATTCTGGAAGATCCATTAATGTCCTTGACATCTATGGGTTCGAGTCATTTAAGAAGAACGGCTTCGAACAATTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATTCGGCATCTTTTCAAACTTCAGCAGGAGGACTACGAATTTAACGGGGTCGATGGTATGAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAGCCTCTAGGAGTTCTCGCCTTGATGGACGAAGAGTTAAGTTTTCCGAAGGCTACAGACCTGACATTTGCTAATAAACTTAAGCAGCACTTTAAATCTCATCCCCGCTTTAAAGGGGAAAGAGGTAGGGCTTTCGGGGTTCGACATTACGCCGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTCCTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTCCAAGCTACTGAAACTATTTGCCTCCAAAATGGTTAACCATTCCTACAAACCAGCAGGTTCGATAAGCTCTACAAAGGGCGTAGAATCCCCTGAGCCAGGTGTTGGTACTAAGTACAAGGCTCTACTATTTGAGCTATTTCATAAATTGGAGCGCACGAGCCATCACTTCATTTGTTGCATGAGACCGAACCGAAGTCAAGTTTGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAACTTAGGTACTGTGGCATTTTGGAGGTTATTAGGATTTCAAGGTCTGGATATCCTATCAGGATAACGCATAAAGAATTTGCTGGAAGGTATGAATTCTTCCTTGAAGAAGCGGGTGTAGCTCGAGATCCGTTGAGTATATCAATTGCTGTTCTGCAGCATTTTAATGTCCACCCCGAGATGTACCATGTTGGTTATACGAAACTATTATTCCGAACTGGGCAGATTCGGGCCGCCTTGGAGGAAAGGAGGACGCAGGCTATGCAAAGCATCCTCGGGGTTCAAAAACACTTCCGTGGTAGCCATTCTCGTGGCCACTTCCATGAACTTAAGCATGCCGCCACGATCTTACAATCATTTATTCGCGGCGAAAGTTCTAGAAGGAGAAGTACCGGTAAGGTGAAGAGGTTCTCATTCACTGTGTGCGCTTTCAATGTTCCTTCTAAGGTGTATGAACAGCAGGCAATCATACGATTACAATCCGTAATACGTGGTTCGTTGGTTCGAAATCATTTTATGGGCAAGAGTGATTCGAATAGGTTTGAAAATCGACCGAACAGGGGCAGGAGACTTTCAGAGGATCACGCGTTGCCTGCAACACTGACCGACCTTCAAAAGAGGGTCCTTGAAGCGGAAGCAACCATAGGGAAAAAGGAAGAGGAAAATGCTGCATTGCGGGACCAAGTAAAGCAATTTGAGGCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATACGTGGCAAAAGCAGATGGCATCTTTGCAAACGAGTCTTGCTGCTGCTAAAAAGAGTCTTGCTACTGAAAATATGGCCGGAAGGGTTGGTGCAGGTAACTCACCACCTCACTATTACGATTCTGAAGATACGACGTCCATGGAATCTCGAACTCCCCGTGAAGCTGGAGCAGGGCGAGAAATGAATGGTACATCATTTGCCATGAACAATCTCGTAAAGGAGTTCGAACAGCAAAAGAATGCATTCGATGATGATGCCAAAGGTTTGGCCGAAGCAAAATCAGGTCAGGGACAGCCAGGAGGGGCTAACACGAATACGGACGAAGAATACCGTAAAATTAAAGTCCGGTTCGAAGCATGGAAAAAGGAGTACAAGGAAAAACTACGTGAAAATAAACCTAAGGTTCATAAACATGGACCTTTCGAGGCTGATATAATTCGTCGAAAATGGTGGGGGAAGTTGCGGTTAAGATCGTCATAG 3525 43.66 MMLSPSPSTIARSSLEEMLDSLRRRDEIDKPKDAPPALPSRPTSKARTPPVGRALPVNFRVNVDGSSGCSINGFNGREDVMRKENRLGNFAFKRLNRDQDEESPYILASENENGDRMNGSNLRGSYWEDNIGYFLQKKLHVWCQLPNGQWELGTIQSSTGAEASVMLSNKKVIKISTVDLLPANPDIIEGVDDLVQLGFLNEPSVLHSLHRRFSQDKIYSNAGSVLIAFNPLKDIKQYGKEFIEAYRQRVINNPHVYATTDAAYSGMLRDEVNQSIIISGESGAGKTETAKAVLEYLTSLGGVSGIDDRISRANVILEAFGNAKTSRNNNASRFGKLIETLFSRTGKICGASRVVRLVNGERSFHVFYQLCAGLPSRLKEKFNIRAASEYSYLNHSECLVIGGVDDARKFNILVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQIIDSENHVEVIANEAVANAAKLMGCSFNELKLVLSTHKEQSGKDSIAKKSTLQQATDARDALAKFIYASLFDWLVEQINKSLQPGREYSGRSINVLDIYGFESFKKNGFEQFCINYANERLQQHFIRHLFKLQQEDYEFNGVDGMKVNFEDNQECLNLIEKKPLGVLALMDEELSFPKATDLTFANKLKQHFKSHPRFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTSKLLKLFASKMVNHSYKPAGSISSTKGVESPEPGVGTKYKALLFELFHKLERTSHHFICCMRPNRSQVCGLFEEDLVLQQLRYCGILEVIRISRSGYPIRITHKEFAGRYEFFLEEAGVARDPLSISIAVLQHFNVHPEMYHVGYTKLLFRTGQIRAALEERRTQAMQSILGVQKHFRGSHSRGHFHELKHAATILQSFIRGESSRRRSTGKVKRFSFTVCAFNVPSKVYEQQAIIRLQSVIRGSLVRNHFMGKSDSNRFENRPNRGRRLSEDHALPATLTDLQKRVLEAEATIGKKEEENAALRDQVKQFEARRLEYEAKMKSMEDTWQKQMASLQTSLAAAKKSLATENMAGRVGAGNSPPHYYDSEDTTSMESRTPREAGAGREMNGTSFAMNNLVKEFEQQKNAFDDDAKGLAEAKSGQGQPGGANTNTDEEYRKIKVRFEAWKKEYKEKLRENKPKVHKHGPFEADIIRRKWWGKLRLRSS 1174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9898036 9907422 - CmoCh01G012360.1 Cmo01g01236 374719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01236 1174 CDD MYSc_Myo8 203 839 IPR036022 -
Cmo01g01236 1174 Gene3D - 785 853 - -
Cmo01g01236 1174 PANTHER MYOSIN 122 1171 - -
Cmo01g01236 1174 PRINTS Myosin heavy chain signature 219 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 PRINTS Myosin heavy chain signature 315 342 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 PRINTS Myosin heavy chain signature 273 298 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 PRINTS Myosin heavy chain signature 538 566 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 ProSiteProfiles IQ motif profile. 877 905 IPR000048 GO:0005515
Cmo01g01236 1174 MobiDBLite consensus disorder prediction 17 34 - -
Cmo01g01236 1174 MobiDBLite consensus disorder prediction 1105 1124 - -
Cmo01g01236 1174 Gene3D Myosin VI head, motor domain, U50 subdomain 419 527 - -
Cmo01g01236 1174 Gene3D Kinesin motor domain 188 784 IPR036961 -
Cmo01g01236 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 896 IPR027417 -
Cmo01g01236 1174 SMART iq_5 918 940 IPR000048 GO:0005515
Cmo01g01236 1174 SMART iq_5 853 875 IPR000048 GO:0005515
Cmo01g01236 1174 SMART iq_5 876 898 IPR000048 GO:0005515
Cmo01g01236 1174 Gene3D - 550 741 - -
Cmo01g01236 1174 Gene3D - 362 418 - -
Cmo01g01236 1174 MobiDBLite consensus disorder prediction 1 15 - -
Cmo01g01236 1174 Pfam IQ calmodulin-binding motif 921 939 IPR000048 GO:0005515
Cmo01g01236 1174 Pfam IQ calmodulin-binding motif 879 896 IPR000048 GO:0005515
Cmo01g01236 1174 ProSiteProfiles Myosin motor domain profile. 189 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 MobiDBLite consensus disorder prediction 1041 1076 - -
Cmo01g01236 1174 ProSiteProfiles IQ motif profile. 919 947 IPR000048 GO:0005515
Cmo01g01236 1174 PANTHER MYOSIN-2 ISOFORM X1 122 1171 - -
Cmo01g01236 1174 Coils Coil 968 1016 - -
Cmo01g01236 1174 SMART MYSc_2a 183 853 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 MobiDBLite consensus disorder prediction 1 53 - -
Cmo01g01236 1174 Pfam Myosin head (motor domain) 191 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo01g01236 1174 Gene3D - 854 903 - -
Cmo01g01236 1174 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 136 185 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01236 Cmo-Chr1:9898036 Cmo04g01333 Cmo-Chr4:6791952 0 dispersed
Cmo01g01236 Cmo-Chr1:9898036 Cmo09g00885 Cmo-Chr9:4595995 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01236 K10357 - csv:101210624 1807.34