Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01242 ATGGTGAAAATTAAGCTTGTTTCCTTGTCAATGGTGCTGTCTATCGCTTTGTTCTTGTGTATAGGATCTTATGCCTCCTTTACTCCCGTTGATAACTATTTGATAGCGTGTGGTTCTTCACAAAACATCACTTTCCAAGGTAGAACTTTCGTTCCTGATACTCAGCATTCATTGCTCTCCCTTGATGGTGGAAGCTCTGTTGTCGTTAGTTCAAAAGCTACTACTGTTCTATCTCCAATTTATCAATCTGCTCGGGTTTTCACCAGCATTGCGTCGTATAAATTTGAAATCAAGGAAGAGGGTCGGCATTGGGTTCGGTTATATTTTTATCCTATACCGAAGTCGGAGCGGAATTTGGCGTCTTCGTCGATAACTGTTGTTACTGATAAGTTTGTGTTGTTGAACAAGTTTTCTTTCAAGAACTATAATGGTTCTTTTATGTTCAAGGAGTATGCTATCAATATCACTTCGGATTCCTTGACACTTACTTTTATCCCGTTTAATGGTTCGGTTTCGTTTGTTAATGCGATTGAAGTTGTCTCGGTGCCTGATGAGCTGCTCCCTGACCAAGCATTGGCTTTGAATCCATCTTCTCCTTTCAGTGGCATCTCGAAACTTGCTCTTGAAACTGTTTATCGACTGAACGTTGGGGGTCCTTTACTCACTTCGCAAAATGATACACTTGGAAGAACTTGGGAGAATGATATGAATTACCTCCATGTCAACAGTTCTGCTGTGAATATCTCTGCTAACCCGGGGAGCATAAAATATCATCCTGGTGTTACACCGGAGACTGCACCGAATTGGGTTTATGCTACTGCCGACGCCATGGGTGACCCGAATGTACCGAACGTGAACTTCAACTTGACTTGGGTTTTTTCTGTTGAGCCAAATTTTCAGTACTTCGTCCGAGTGCATTTTTGTGATATAATGAGCAAGGCTCTCAATAATCTGGTATTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTGTCGACGATAACCGGTGACTTGGGTGTGCCTTATTACAAAGACTTCATTGCCAACTCAGCAGGTTCAGCTACTTTGACCGTTAGTGTCGGTCCAGATCAAATGGCAGACCTCACGAATGCAACCATGAATGGCTTGGAGATTATGAAGTTAAGCAATCAAGATGGGAGCTTGGATGGAACTTCGTCGGTCGAAAGTCTTTTCCCAAATGCACCCTCGAAGAAGAACAATATAGCAATCATTGTTGGTCCTGTCTTGGGAGCTGTAGTGGGCCTAACTTTGCTCGTCTTGTGTTATTGCTGCTTCGTAGCTCGCAGATCAAAGACGACTCAACCAGCACACCCATGGCTGCCTTTGCCTTTGTATGGAAACTCTCAAACCATGACAAAAGGATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGCCTTGGCAGATTGTTCACATTTCAGGAAATTCTTGATGCTACCAACAAGTTTGATGAAAACCTTCTCCTTGGAGTTGGTGGTTTTGGTCGGGTTTACAAGGGAACACTCGAAGATGGTCTGAAAGTTGCTGTCAAAAGAGGTAACCCCAGATCGGAACAAGGTCTTGCCGAGTTTCGAACTGAAATAGAAATGTTATCAAAGCTCCGACATCGTCACTTGGTGTCTCTTATTGGCTATTGTGACGAAAGATCAGAAATGATTCTTGTCTATGAATATATGGCGAATGGACCTTTACGGAGTCATTTGTACGGAACGAATCTACCGCCATTGTCATGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGGGATGTTAAAACGACAAACATTCTCTTGGACGAGAATTTCGTTGCGAAAGTTGCAGACTTTGGTCTCTCAAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACCGAGAAGTCAGACGTATATTCATTTGGGGTCGTGCTAATGGAAGTTCTCTGCACGAGACCAGCGCTTAACCCTGTTCTACCCCGAGAACAAGTCAATATAGCCGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATCATGGACCCCAATCTGGTTGGTAAAGTTAACCCAGCATCGCTTAAGAAGTTCGGTGAAACAGCTGAGAAGTGCCTGGCTGAGTATGGGGTTGACAGACCTTCTATGGGAGACGTCCTATGGAATCTGGAATACGCTCTTCAGCTCGAGGAAACCTCATCCGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATCCCTACTATCCAATTAACCCCTCTCGAGCCATTTGATAACAGTGTAAGCATGATCGATGTAGGGAACTCCGGTACTGACGATGATGCTGAAGATGCTGCAACAAGTGCAGTATTTTCCCAGCTCGTAAATCCTCGCGGAAGATGA 2529 44.09 MVKIKLVSLSMVLSIALFLCIGSYASFTPVDNYLIACGSSQNITFQGRTFVPDTQHSLLSLDGGSSVVVSSKATTVLSPIYQSARVFTSIASYKFEIKEEGRHWVRLYFYPIPKSERNLASSSITVVTDKFVLLNKFSFKNYNGSFMFKEYAINITSDSLTLTFIPFNGSVSFVNAIEVVSVPDELLPDQALALNPSSPFSGISKLALETVYRLNVGGPLLTSQNDTLGRTWENDMNYLHVNSSAVNISANPGSIKYHPGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSTITGDLGVPYYKDFIANSAGSATLTVSVGPDQMADLTNATMNGLEIMKLSNQDGSLDGTSSVESLFPNAPSKKNNIAIIVGPVLGAVVGLTLLVLCYCCFVARRSKTTQPAHPWLPLPLYGNSQTMTKGSTTSQKSGTASFISLASSSLGRLFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGLKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTNLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDVGNSGTDDDAEDAATSAVFSQLVNPRGR 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9971509 9974037 - CmoCh01G012420.1 Cmo01g01242 374725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01242 842 SMART serkin_6 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01242 842 Pfam Malectin-like domain 35 384 IPR024788 -
Cmo01g01242 842 PANTHER OS07G0166700 PROTEIN 19 835 IPR045272 GO:0004714|GO:0006468
Cmo01g01242 842 Gene3D - 32 182 - -
Cmo01g01242 842 Gene3D - 206 387 - -
Cmo01g01242 842 CDD STKc_IRAK 507 772 - -
Cmo01g01242 842 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 835 - -
Cmo01g01242 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cmo01g01242 842 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Cmo01g01242 842 Gene3D Phosphorylase Kinase; domain 1 460 576 - -
Cmo01g01242 842 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Cmo01g01242 842 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01242 842 SUPERFAMILY Protein kinase-like (PK-like) 478 772 IPR011009 -
Cmo01g01242 842 Pfam Protein tyrosine and serine/threonine kinase 506 699 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01242 Cmo-Chr1:9971509 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo04g01294 Cmo-Chr4:6573721 Cmo01g01242 Cmo-Chr1:9971509 0 dispersed
Cmo12g01150 Cmo-Chr12:10427951 Cmo01g01242 Cmo-Chr1:9971509 0 dispersed
Cmo02g00514 Cmo-Chr2:2849613 Cmo01g01242 Cmo-Chr1:9971509 1.78E-168 transposed
Cmo03g00681 Cmo-Chr3:6011431 Cmo01g01242 Cmo-Chr1:9971509 5.86E-75 transposed
Cmo04g01969 Cmo-Chr4:10091801 Cmo01g01242 Cmo-Chr1:9971509 0 transposed
Cmo01g01242 Cmo-Chr1:9971509 Cmo09g00879 Cmo-Chr9:4556558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74049 PF12819 Malectin_like 8.90E-39 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01242 - - csv:101215627 1527.3