Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01249 ATGGATCCTCGCACTCGTTTGAATCATGCTCTGTTTCAGCTCACTCCCACTAGAACCAGATGTGAACTGGTTATCTCAGCTAATGGTGGTGCTACTGAGAAACTGGCATCTGGGCTTCTTCAGCCATTTATCTCCCACCTCAAATGTGCTCGAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCTATTGCAGGATCAAACGCTTCTTGGTTCACTAAGGGCACTCTTCAGAGGTTATTTGTTCTTCTCTTCGTTATGAAGATTATTAGAATTAGAATTCAGAGTTTTGGGTTTGATCCAAGCTTTAGCATGAACTCTTTTGTGGATTTATTTGTGAGATTTGTAAGCACACCAGAGGTTCTTGAGAGATTTGTTACCATAGAAAAGGAGATTGTGCAGATCGAGAATTCTATGTCCACAGATGCTGAAGAAAACGCAACAGTTGCTGATTGGAACTCGAAACGATCGAGCCCAACGCAGCGGGTGAAGGGCGATTTGGATGATATTAACGACGATGCTACATTGAAGGACAATCCCAAGATCCGTCTTCAACGTGTTTTAGAAACTCGAAAGGCTGTGCTACACAAAGATCAAGCAATGGCTTATGCTCGTGCTTCGGCTGCGGGATATGAGATGGATTATATTGAGGATCTTATAGCTTTTGCTGAGGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAATTTTATGGACTTATGCAAGCGAAAGAACGAAGACAAGCTCTGGATAGATGAAATAGCAGCTATGCAGGCGTTCTCTCAGCCAGCATTTTCGTACTCAGAAACTTCTGGTATCGTACTAGCTGGTGAAGAGAACGAATCTAACGTCAATGCTCATGTATCAAAATCTGATTCGTCAGCAAGTCAAGGAAGTTCAGAGAACAATCAAGATGGTAGCCTTCCGAAATCAGCACAGATGTCGATGAATGGGAAAGCTCAAGTGCCAACGACGTGGCCTAATCATCCTCAATATATGCACAACTTTCAAGGTCCATTATATCCTCCATATCAAGGATATCTTTTCCCCGGAATGCAGATGCCGCCGCCGTATTACCCAGGGAATATGCAGTGGCCATCAAATGCCGAGGACTTGAGTCTTGCTTCCGACCGAGAGCCTGGCGGTCATAGGAGTTCTAAATCTCGTAGGAGCAAGAAGAAACATTCACATAAGGAGAGAACTTCAGAACAAGAAGCAACTACAGAGTCTGGTGAATCCAGTGTCGACAGTGAATCGGACGAACAATCTTCAGATGATAAAGAGCAATACTCAACGGAAAAGATACGTAAGAAAAAGCATGGCAAGAAATCTTCAAGAACGGTCGTTATACGTAATATTAACTACATAACGTCAAAGAGGAATGGCGAAAAGGGTAGCCACTCAGAGGATGATTCATCCGACGAGGGTGAGTTTATTGATGGCGATTCCATCAAACAGCAGGTAGAGGAAGCTGTTGGGACGTTGGAGAGAAGACATAAGTCAACCGGTCGACACCAAAAGAAACAAAATGGCTATGACAATGCAGATGGCTTAAATGATTCTGCAGAACGGGAGACTAACGGTATATCGAACAATTCAGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGAATCTTCTTATGAGCGAAAGGGAGCCGGAAAAGTCTCGTGAATTTCCCTCTGTTCAGGATCAAGACGGTCACGAGGGGAGGTCACCTATGCTAAACTTAGAATCAGAGAGAGCACCGAGACAACGTGAAGTTTCGAGTGATTCTTTCGTCGTGACAGACAGGAGTTCGGGTAATGAAGGGAGAACACATATCGAAAATTTTGAAGCTGGTTATGTTGCCAACCCAATTAATAGAAGGAGAGAAAGCACATATGAAGAGTTATTGTATTCACAAAGAGGTGGAGAATCAGGGAGCTATGTGCATTCCACTGCGTCCGATTTCACCAATGTGTCGTCCAGAATGAAAACGCAAACAGAAGGCGATTGGTTCGTCAGCAATCCGACTAATAAATCAGAAAATCAGTGTCAAAACGTCTGTCCCAGAGTTTACGACACCGACTTCTCTTCATCGGCTCAAGACCATTTGTATTCAGAGAAAAACAAGAAAGATGTGTTGGCTGATGACTCTTTCATGATTCAGCCTCGACCATTAGTAGATGACCAATCCGACTTTCAATCTAGACGAGACATAAGCATGGTGTCGGACATTGTTGGGGATGCCGAAAATGAGTATGTCAAACAAGAAACCTCAAGAGACGAAAAGCCTGCAACTCTCGGTGTCAGTGAACCGGATGACCTTTACATGATGCTTGATCGTGATATAGCTACAGAGCCCACGGTAGCATCTTGGAGCCCAGAAATGGACTACGAAAATAATTTTTCAACCATAGCGAAGAGTAAGCACAGTGATATCGAAGCCGATGACGGTGGGGACAAGAGTAATAAAAATAAAGAATCTGGGGGCAAAGTTCCAAGTAAAGAAGCCAGATCCAAATCCTTGGGAGGACCTCTAGCTAAGGGAAAATATGACGTTCAATCACGAACACGAAAACCGCTTTCTGGAAGCAGAACTACCGTCCCGAAGAGCAAATTCGAGAAGGTATTCGGTTTTCTTGCCTTTTCGCACCTGCATTCGGTTGAAATCTCCGGGCAGGAAGAAGAGACGAGAAAGAGAATGGAAGAGTTGGCGATTCAACGCCAGAAACGAATTGCTGAAAGGAGTTCTAAGCCTGGTGTAACCAAGATTGAGAAGCAAAAAAGCCAATCCCTGGTCCAAGAAGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCGACGATAGATCGACTTGCAACGGCTCGTACACCTCAGAAGGTATCTGCAACTCAATCACCATCGAGTCAACCAAAAAAGCCGACCTCGAGAGCGAATGGCATTACCTCATCAGAAAAGTTCCCTAAATCTGACAGTAAGAAACTTATCTCGAACAAAGTAAAACCTTCTGATTTAAAACACGAGCACAAGAAATTGATTATGGCACTTTCTTCTGATTCTTATGGCCAGACAACAATGGATGGCAAGGAAGACGTAGTAGCATTGCCAGCTGAGTCGGCAGTACCGAACGCAACTCAACCAATCGAGAACGTCATCGATGATATCAAAGTTATCGAGGAGGTACGTACTACCCATTCAGTCGAAAAAAATGATGAAACTTTTATTACTCAAGGCAATGATAGTTCAAACGACAAGGTTATCGATTTATCTAAAGCACCTTTAGTTCTTAATGAAGAAAAAATCGTTTCTAACGGTCACAACGAACATGCTTTGAAAAAGATGGTCGATTTTGCGGTGTTGTCTGATAAAGCCTTAGGTCCTGTAATCTTGAATACTGGTTTAGCCACACCCGAAATTTCCGAGATCAAAATCTCGACTCCTCCCTCAACTAACGAGATGGTCTCGGAGTACTCAACACACTCGAGGAAGAAATGGATTAGTGATGAAAACTCTTCCAAAGCACCTAAGGGGTTTAGAAAGCTACTTTTTTTCGGACATAAAAGCCGAAACACCGCCTTGGATTGA 3585 43.6 MDPRTRLNHALFQLTPTRTRCELVISANGGATEKLASGLLQPFISHLKCARDQISKGGYSITLRPIAGSNASWFTKGTLQRLFVLLFVMKIIRIRIQSFGFDPSFSMNSFVDLFVRFVSTPEVLERFVTIEKEIVQIENSMSTDAEENATVADWNSKRSSPTQRVKGDLDDINDDATLKDNPKIRLQRVLETRKAVLHKDQAMAYARASAAGYEMDYIEDLIAFAEAFGASRLREACINFMDLCKRKNEDKLWIDEIAAMQAFSQPAFSYSETSGIVLAGEENESNVNAHVSKSDSSASQGSSENNQDGSLPKSAQMSMNGKAQVPTTWPNHPQYMHNFQGPLYPPYQGYLFPGMQMPPPYYPGNMQWPSNAEDLSLASDREPGGHRSSKSRRSKKKHSHKERTSEQEATTESGESSVDSESDEQSSDDKEQYSTEKIRKKKHGKKSSRTVVIRNINYITSKRNGEKGSHSEDDSSDEGEFIDGDSIKQQVEEAVGTLERRHKSTGRHQKKQNGYDNADGLNDSAERETNGISNNSEGEKISSPWDAFQNLLMSEREPEKSREFPSVQDQDGHEGRSPMLNLESERAPRQREVSSDSFVVTDRSSGNEGRTHIENFEAGYVANPINRRRESTYEELLYSQRGGESGSYVHSTASDFTNVSSRMKTQTEGDWFVSNPTNKSENQCQNVCPRVYDTDFSSSAQDHLYSEKNKKDVLADDSFMIQPRPLVDDQSDFQSRRDISMVSDIVGDAENEYVKQETSRDEKPATLGVSEPDDLYMMLDRDIATEPTVASWSPEMDYENNFSTIAKSKHSDIEADDGGDKSNKNKESGGKVPSKEARSKSLGGPLAKGKYDVQSRTRKPLSGSRTTVPKSKFEKVFGFLAFSHLHSVEISGQEEETRKRMEELAIQRQKRIAERSSKPGVTKIEKQKSQSLVQEAKKSPKPVLRSSTIDRLATARTPQKVSATQSPSSQPKKPTSRANGITSSEKFPKSDSKKLISNKVKPSDLKHEHKKLIMALSSDSYGQTTMDGKEDVVALPAESAVPNATQPIENVIDDIKVIEEVRTTHSVEKNDETFITQGNDSSNDKVIDLSKAPLVLNEEKIVSNGHNEHALKKMVDFAVLSDKALGPVILNTGLATPEISEIKISTPPSTNEMVSEYSTHSRKKWISDENSSKAPKGFRKLLFFGHKSRNTALD 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10026086 10031967 + CmoCh01G012490.1 Cmo01g01249 374732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01249 1194 PANTHER COP1-INTERACTING PROTEIN 7 1 84 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 950 986 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 515 549 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 553 592 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 287 333 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 908 922 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 450 464 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 809 868 - -
Cmo01g01249 1194 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 84 - -
Cmo01g01249 1194 PANTHER COP1-INTERACTING PROTEIN-RELATED 104 1188 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 376 611 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 809 834 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 908 997 - -
Cmo01g01249 1194 MobiDBLite consensus disorder prediction 465 487 - -
Cmo01g01249 1194 PANTHER COP1-INTERACTING PROTEIN 7 104 1188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01249 - - - mcha:111010382 1633.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01249 Cmo-Chr1:10026086 Cmo08g01052 Cmo-Chr8:6784979 3.57E-82 dispersed
Cmo01g01249 Cmo-Chr1:10026086 Cmo09g00872 Cmo-Chr9:4506319 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01249 Cmo_Chr01 FPKM 13.982555 13.583821 22.15164 19.958397 23.59474 24.36153 25.165636 14.371051 15.774797 16.179646