Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01251 ATGGCTCTTCAACCTGCTTCTCTGGTTTCCCCTGCTCTTTCTCTGCCCAAAGAGGGGAAGTCTACTGTTTGCTTGAAGGATTCTAGTTTCTTTGGAATTTCATTCTCAGACCATCTCAAATCTGAATTCAGTTCATCTGCATTGAGGTGTAAGAGAGAATTCAACCACCATGTTGGTGCCATTAGGGCTCAGACAACTGCTACCACAACTCCAGCAGTTAACAAAGCTGCTCCAGATGGGAAGAAAACTCTTAGAAAGGGCAGTGTTGTGATAACTGGAGCTTCTTCTGGTTTGGGTCTGGCCACAGCCAAGGCTCTGGCTGAAACTGGAAAATGGCATGTCATTATGGCTTGCAGAGACTTTCTCAAGGCTGAAAGAGCTGCCAAATCTGCTGGCATTACCAAGGAAAACTACACCGTTATGCATTTGGACCTCGCTTCGCTCGACAGCGTTCGACAGTTTGTTGACAACTTCAGGCAGTCAGGCAGGCCACTTGATGTGTTGGTGTGCAATGCTGCTGTTTATCTCCCAACTGCTAAAGAGCCTACCTTCACTGCTGAAGGTTTTGAACTTAGTGTTGGGACTAACCATCTTGGTCACTTCCTCCTCTCCCGTTTGTTGTTAGAGGATTTGCAGAAATCTGATTACCCCTCAAAGCGGCTCATCATCGTTGGATCGATAACCGGGAACACTAATACCTTGGCTGGAAATGTACCTCCTAAGGCCAACCTTGGAGACCTTAGGGGACTTTCTGGAGGACTGACCGGCCTAAACAGCTCGGCCATGATCGATGGTGGTGAGTTCGATGGTGCCAAGGCTTACAAGGACAGCAAAGTGTGCAACATGCTTACTATGCAAGAGTTCCACAGGCGGTACCATGAAGAAACTGGCATCACATTTGCTTCCCTCTACCCGGGATGCATTGCTACAACTGGTTTGTTCAGAGAGCACATTCCCTTGTTCAGATGGCTCTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTATGTTTCAGAAGAAGAATCAGGAAAAAGACTGGCTCAGGTAACTTCACTTCACCGTAGACAACGAAAACGATGTGTAACATCTGATCATATGGTTCAAGAATTTGATTGGTTGCTTGTAATGCAGGTTGTGAGTGACCCGAGCTTGACGAAGTCGGGCGTGTATTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCAAGTGATGGAGAGAAGGCTCGCAGAGTGTGGGAGCTCAGTGAGAAGCTTGTTGGATTGGCTTAA 1287 47.32 MALQPASLVSPALSLPKEGKSTVCLKDSSFFGISFSDHLKSEFSSSALRCKREFNHHVGAIRAQTTATTTPAVNKAAPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLQKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLSGGLTGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRWLFPPFQKYITKGYVSEEESGKRLAQVTSLHRRQRKRCVTSDHMVQEFDWLLVMQVVSDPSLTKSGVYWSWNKNSASFENQLSQEASDGEKARRVWELSEKLVGLA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10046238 10047902 + CmoCh01G012510.1 Cmo01g01251 374734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01251 428 PANTHER - 376 427 IPR005979 GO:0016630
Cmo01g01251 428 PANTHER - 1 351 IPR005979 GO:0016630
Cmo01g01251 428 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Cmo01g01251 428 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Cmo01g01251 428 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Cmo01g01251 428 Gene3D - 77 428 - -
Cmo01g01251 428 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 376 427 - -
Cmo01g01251 428 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 351 - -
Cmo01g01251 428 Pfam short chain dehydrogenase 89 231 IPR002347 -
Cmo01g01251 428 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 85 351 IPR005979 GO:0016630
Cmo01g01251 428 CDD LPOR_like_SDR_c_like 86 427 - -
Cmo01g01251 428 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 319 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01251 K00218 por; protochlorophyllide reductase [EC:1.3.1.33] - csv:101208554 700.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01251 Cmo09g00869 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01251 Cmo-Chr1:10046238 Cmo02g01090 Cmo-Chr2:6620441 2.38E-31 dispersed
Cmo20g00208 Cmo-Chr20:1016855 Cmo01g01251 Cmo-Chr1:10046238 0 transposed
Cmo01g01251 Cmo-Chr1:10046238 Cmo09g00869 Cmo-Chr9:4481952 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01251 Cmo_Chr01 FPKM 43.363892 48.259964 17.801657 17.435457 22.392384 19.497656 18.307625 13.363716 15.599066 13.933613