Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01264 ATGGCTTCCTCCAATTCCTTCTTCACCACGCCGACCAAAACCCCTTCAGAAAAGTCCTCCAGAAAGACTCAAAACTCCACCCGGATGGACGCGTCCGAGTCCAGATCCCGATTTGAAGCCTACAATCGTCTTCAGGCGGCGGCTGTGGCGTTTGGTGAAAAGCTTCCGATTCCTGAGATCGTTGCCTTGGGTGGCCAATCCGACGGCAAGAGCTCTCTCTTAGAAGCCCTACTTGGATTCCGCTTCAATGTCCGCGAAGTCGAAATGGGGACACGCAGGCCTTTGATCCTCCAAATGGTCCATGATCCGACTGCTCTCGAGCCCCGTTGCCGATTTCAGGACGAAGATTCTGAAGAATATGGAAATCCTGTTGTTTTAGCATCTGCAATTGCAGACATTATCAAGTCTCGAACTGAGGCGCTGTTGAAGAAGACCAAAACTGCAGTTTCTTCCATCCCTATTGTGATGAGAGCAGAGTATGCACATTGCCCCAACCTTACCATTATTGACACCCCTGGCTTTGTTCTTAAGGCAAGGAAGGGAGAGCCAGAGAACACACCACAAGAAATTCTTTCAATGGTGAAGTCACTTGCAAGTCCTCCCCATCGTATCCTCTTGTTCCTTCAACAAAGTAGTGTAGAGTGGTGTTCTTCATTGTGGTTGGATTCAATTCGTGAAATTGATCCCGCATTCAGACGGACTATTGTTGTTGTCTCCAAATTTGATAATCGTCTTAAGAAAGCTATGTCAACTTATGAATTCGGTGACCGATGGGAAGTGGATAAGTATTTGAGTGCCAGTGGTTACCTTGGAGATAACACTCATCCATTTTTTGTGGCCCTGCCAAAGGACCGAAATACTGTTTCTAATGATGAATTTCGGCGACAAATATCTCAAGTGGATTCTGAAGTTCTTCGTCATCTACGTGATGGTGTCAAGGGAGGGTTCGATGAAGAGAAATTTAGATCTCACATTGGTTTTGGCTGCCTGAGGGAATATCTAGAATCAGAGCTTCAGAAGAGATACAAGGAAGCTGCTCCAGCAACTTTGGCTTTGCTAGAGCAACGTTGTGGTGAAGTTGCATCTGAACTATGTAGAATGGAGTCTAAAATACAAGCTACTTCAGATATTGCACATCTTAGGAAATATGCTATGCTGTATACAGCTTCTATCAGCAATCATGTGAGCGCATTGATTGAAGGTGCGGCAGATCCTGCACCAGAGCAATGGGGGAAAACTACTATGGAGGAACAGTCGGGAAGTGGCATTGGAAGTTGGCCTGCTGTTACATCAGAGGTCAAGCCTGCCAACTCCAGCCTTCGGTTGTATGGTGGGGCTGCTTTTGAACGAGTAGCAAACATATTACTCGCTCATACTGGCAAACGTGGAGGCAGGGGATTAACAGAAGCAGCTGCAGAGATTGCCCGTGCTGCTGCACGATCATGGCTTGCTCCTCTTCTAGATACTGCTTGTGATCGTCTTGCTTTTGTACTGGAAAATCTTTTTGATCTTGCATTGGAAAGAAATCGTGCCTATGAATCACAAAATGGGAAGAAGCACTGTAGCATGGACGGGTATGTTGGTTTTCACGCTGCTTTAAGGCATGCTTACAATCGTTTTCTGAAGGATCTTGCTAAACAATGCAAGCAACTACTTCGTCACCACCTCGACTCTGTTACAAGCCCATATTCACTTGTTTGCTACGAGAATGATTTTGAAGGAGGCTCTCTCTCAAATGCATCATCTTTTCAGAAAATTAATCGGGCTTCTGCTGGTTTGTTTTCGTTTGAATTATCTGAATGTGGGACAGATTCTCATGACGAAACAATAAAGGATCAGGAGAACAGACCTCCAGAAAAAAACGTACAGCAGATAACACCAGGAAAAGGTAAAGAATCTAGAGAAGCCCTTCGAGAATGCCAAATGACTGTTCCTGAAACTCCTTCACCAGAGCAACCTAGTGATGTTGGGTATGCAGTAAAGAAGGAATTTGTGAATGGGATGGATATTGGAGTTCGAAAAAGGGTTTCAAGAGTGACCAGAAATTCTAGTCGGATCGGTGGTCAAGATGGCGGCGGAACTTTGTTTAGTAATGATGATGGCAGTTCCAGATGTAGCTCAGCCTACACAGAAATTTGCTCATCGGCAGCGCAACATTTTGCCAAGATTCGTGAAGTTCTCATTGAGCGAAGTGTGATGTCTACACTGAATTCTGGATTCTTAACACCTTGTCGAGAAAAACTTGTAGTGGCACTTTGTTTGGAATTATTTGCCGTGAATGACGAGAAGTTCACAGACATGTTCGTAGCTCCAGGCGCTATTGAGGTACTTCAGAATGAAAGACAGTCTCTCCAAAAGCGCCAAAAGATACTACAAACATGTTTGAATGAGTTCAAAACTGTAGCTCAATCACTTTGTTGA 2421 44.77 MASSNSFFTTPTKTPSEKSSRKTQNSTRMDASESRSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDPTALEPRCRFQDEDSEEYGNPVVLASAIADIIKSRTEALLKKTKTAVSSIPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPQEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDSIREIDPAFRRTIVVVSKFDNRLKKAMSTYEFGDRWEVDKYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDSEVLRHLRDGVKGGFDEEKFRSHIGFGCLREYLESELQKRYKEAAPATLALLEQRCGEVASELCRMESKIQATSDIAHLRKYAMLYTASISNHVSALIEGAADPAPEQWGKTTMEEQSGSGIGSWPAVTSEVKPANSSLRLYGGAAFERVANILLAHTGKRGGRGLTEAAAEIARAAARSWLAPLLDTACDRLAFVLENLFDLALERNRAYESQNGKKHCSMDGYVGFHAALRHAYNRFLKDLAKQCKQLLRHHLDSVTSPYSLVCYENDFEGGSLSNASSFQKINRASAGLFSFELSECGTDSHDETIKDQENRPPEKNVQQITPGKGKESREALRECQMTVPETPSPEQPSDVGYAVKKEFVNGMDIGVRKRVSRVTRNSSRIGGQDGGGTLFSNDDGSSRCSSAYTEICSSAAQHFAKIREVLIERSVMSTLNSGFLTPCREKLVVALCLELFAVNDEKFTDMFVAPGAIEVLQNERQSLQKRQKILQTCLNEFKTVAQSLC 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10120784 10124969 + CmoCh01G012640.1 Cmo01g01264 374747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01264 806 MobiDBLite consensus disorder prediction 604 633 - -
Cmo01g01264 806 MobiDBLite consensus disorder prediction 1 35 - -
Cmo01g01264 806 SMART dynamin_3 34 262 IPR001401 GO:0003924|GO:0005525
Cmo01g01264 806 MobiDBLite consensus disorder prediction 604 618 - -
Cmo01g01264 806 PANTHER DYNAMIN 34 804 IPR022812 -
Cmo01g01264 806 PRINTS Dynamin signature 229 245 IPR022812 -
Cmo01g01264 806 PRINTS Dynamin signature 57 75 IPR022812 -
Cmo01g01264 806 PRINTS Dynamin signature 82 99 IPR022812 -
Cmo01g01264 806 PRINTS Dynamin signature 160 177 IPR022812 -
Cmo01g01264 806 CDD DLP_1 55 347 IPR001401 GO:0003924|GO:0005525
Cmo01g01264 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 355 IPR027417 -
Cmo01g01264 806 Gene3D - 25 400 IPR027417 -
Cmo01g01264 806 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 54 347 IPR030381 GO:0005525
Cmo01g01264 806 MobiDBLite consensus disorder prediction 1 31 - -
Cmo01g01264 806 PANTHER DYNAMIN-LIKE PROTEIN C 34 804 - -
Cmo01g01264 806 Pfam Dynamin family 60 240 IPR045063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01264 - - - bhj:120085297 1438.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01264 Cmo-Chr1:10120784 Cmo11g01509 Cmo-Chr11:10700269 3.72E-47 dispersed
Cmo01g01264 Cmo-Chr1:10120784 Cmo19g00502 Cmo-Chr19:5964509 9.62E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g203 . . . . . . . . . . Cma01g01210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01264 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01264 Cmo_Chr01 FPKM 22.438047 26.184916 7.095058 7.352102 39.831642 38.08411 39.733505 12.421899 12.368042 13.382346