Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01271 ATGTCTGACGTAGCGAGTATAGCAGAGGCGGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTATACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTCGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTATTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGCTCTGTTGCAGATCTGCTGCAAACCGGGCCACCCCTTGATGAAATGTCAATGGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGCGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTTATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAACACCTGCTGAGAGGCCCAGTGCCAAAGAGCTTCTGAAGCATCGGTTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGATGAAGAGACACCAACTAATAGTCCTAGGGGTATGGGTGAAATGGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCTAAGAATGCGGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAAAACCACCTCAAGTTGGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCGCCTAGTAGAGTTGCAGAGAGCGGTAACTGGCTAGCTGCATCTGCAAATGCACCACGTGACATAGCAGAAAGCACTAGAGATTCATACAATACGGGGAATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTATTGTGATTCGGTCTCCCAGGGGATCTAATGCATCTACTCAATTTCATAATGAAAACAATCCGTCTGGAAGTGCACAAGCATGTTTTGAGGACACATCCCTTTGTGGTACTATTGTTATGCGTGGTGAACGTGATGATTCTGATTCTCCTCGGACTCCTAAATCCAGATTGGGAATTCAAGAAAAAACTTCAAGTTTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAGGCTGCAATTCAAGCAGCAGGATTGAAGAGAGCTAATGCAAGGGAAAGATCAGCTCGCCCTATACACAGCGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCATGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCTTCTCTATCAAGTGATAATGAAGAATTTGCAAAAATAGCCTCGGGTTCTGCACCTTTATCGATGTTGTTTATGCCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGTACCGTAATTAATGCACTTATAAATATGGAACGCGTAAAACCTGGATCATGTGAAGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCTGAGGAATCTTCACTGAAAAATTTACAAGACTTGGCCACTCGCTTATTCAACAAGACAAAGACAGTTCCTGAAGATACACAAGATGTCGCCGATTCTGATAGCAGCAAAAAGCAATCGAACAAGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTGAGTCCAGCTTGA 2082 42.7 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQTGPPLDEMSMACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKTPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDEETPTNSPRGMGEMDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVKPPQVGERKPEIPYGQAAPSRVAESGNWLAASANAPRDIAESTRDSYNTGNASEDEELSVSGSGTIVIRSPRGSNASTQFHNENNPSGSAQACFEDTSLCGTIVMRGERDDSDSPRTPKSRLGIQEKTSSLSPEDSAFNLAEAKAAIQAAGLKRANARERSARPIHSDRKENRRTEQTVSSSDSSRHSHEFFDAPRALPKPSLSSDNEEFAKIASGSAPLSMLFMPSLKEVVADDSEGSPSRTVINALINMERVKPGSCEVLVTKLLQKLASSEESSLKNLQDLATRLFNKTKTVPEDTQDVADSDSSKKQSNKELHSNSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10161747 10179700 + CmoCh01G012710.1 Cmo01g01271 374754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01271 693 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 691 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 388 442 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 644 668 - -
Cmo01g01271 693 Coils Coil 489 509 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 317 331 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 283 297 - -
Cmo01g01271 693 CDD STKc_MST3_like 14 287 - -
Cmo01g01271 693 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 691 - -
Cmo01g01271 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmo01g01271 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 Gene3D Transferase(Phosphotransferase) domain 1 12 302 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 505 526 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 383 442 - -
Cmo01g01271 693 SUPERFAMILY Protein kinase-like (PK-like) 13 325 IPR011009 -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 283 370 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 500 553 - -
Cmo01g01271 693 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 MobiDBLite consensus disorder prediction 455 483 - -
Cmo01g01271 693 Coils Coil 41 68 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 646 662 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 467 483 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01271 Cmo09g00844 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01271 Cmo-Chr1:10161747 Cmo15g00350 Cmo-Chr15:1636510 3.53E-70 dispersed
Cmo18g01122 Cmo-Chr18:11582886 Cmo01g01271 Cmo-Chr1:10161747 6.81E-69 transposed
Cmo01g01271 Cmo-Chr1:10161747 Cmo09g00844 Cmo-Chr9:4321404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74050 PF00069 Pkinase 5.80E-69 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01271 K08838 - csv:101214412 1180.62