Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01271 ATGTCTGACGTAGCGAGTATAGCAGAGGCGGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTATACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTCGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTATTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGCTCTGTTGCAGATCTGCTGCAAACCGGGCCACCCCTTGATGAAATGTCAATGGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGCGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTTATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGCGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAACACCTGCTGAGAGGCCCAGTGCCAAAGAGCTTCTGAAGCATCGGTTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGATGAAGAGACACCAACTAATAGTCCTAGGGGTATGGGTGAAATGGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCTAAGAATGCGGGATGGGACTTTAGCATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAAAACCACCTCAAGTTGGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCGCCTAGTAGAGTTGCAGAGAGCGGTAACTGGCTAGCTGCATCTGCAAATGCACCACGTGACATAGCAGAAAGCACTAGAGATTCATACAATACGGGGAATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTATTGTGATTCGGTCTCCCAGGGGATCTAATGCATCTACTCAATTTCATAATGAAAACAATCCGTCTGGAAGTGCACAAGCATGTTTTGAGGACACATCCCTTTGTGGTACTATTGTTATGCGTGGTGAACGTGATGATTCTGATTCTCCTCGGACTCCTAAATCCAGATTGGGAATTCAAGAAAAAACTTCAAGTTTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCAAAGGCTGCAATTCAAGCAGCAGGATTGAAGAGAGCTAATGCAAGGGAAAGATCAGCTCGCCCTATACACAGCGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCATGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCTTCTCTATCAAGTGATAATGAAGAATTTGCAAAAATAGCCTCGGGTTCTGCACCTTTATCGATGTTGTTTATGCCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGTACCGTAATTAATGCACTTATAAATATGGAACGCGTAAAACCTGGATCATGTGAAGTTCTTGTTACCAAGTTGCTCCAGAAATTGGCCAGTTCTGAGGAATCTTCACTGAAAAATTTACAAGACTTGGCCACTCGCTTATTCAACAAGACAAAGACAGTTCCTGAAGATACACAAGATGTCGCCGATTCTGATAGCAGCAAAAAGCAATCGAACAAGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTGAGTCCAGCTTGA 2082 42.7 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQTGPPLDEMSMACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKTPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDEETPTNSPRGMGEMDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVKPPQVGERKPEIPYGQAAPSRVAESGNWLAASANAPRDIAESTRDSYNTGNASEDEELSVSGSGTIVIRSPRGSNASTQFHNENNPSGSAQACFEDTSLCGTIVMRGERDDSDSPRTPKSRLGIQEKTSSLSPEDSAFNLAEAKAAIQAAGLKRANARERSARPIHSDRKENRRTEQTVSSSDSSRHSHEFFDAPRALPKPSLSSDNEEFAKIASGSAPLSMLFMPSLKEVVADDSEGSPSRTVINALINMERVKPGSCEVLVTKLLQKLASSEESSLKNLQDLATRLFNKTKTVPEDTQDVADSDSSKKQSNKELHSNSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10161747 10179700 + CmoCh01G012710.1 Cmo01g01271 374754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01271 693 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 691 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 388 442 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 644 668 - -
Cmo01g01271 693 Coils Coil 489 509 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 317 331 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 283 297 - -
Cmo01g01271 693 CDD STKc_MST3_like 14 287 - -
Cmo01g01271 693 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 691 - -
Cmo01g01271 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmo01g01271 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 Gene3D Transferase(Phosphotransferase) domain 1 12 302 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 505 526 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 383 442 - -
Cmo01g01271 693 SUPERFAMILY Protein kinase-like (PK-like) 13 325 IPR011009 -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 283 370 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 500 553 - -
Cmo01g01271 693 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01271 693 MobiDBLite consensus disorder prediction 455 483 - -
Cmo01g01271 693 Coils Coil 41 68 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 646 662 - -
Cmo01g01271 693 MobiDBLite consensus disorder prediction 467 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01271 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1180.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01271 Cmo09g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01271 Cmo-Chr1:10161747 Cmo15g00350 Cmo-Chr15:1636510 3.53E-70 dispersed
Cmo18g01122 Cmo-Chr18:11582886 Cmo01g01271 Cmo-Chr1:10161747 6.81E-69 transposed
Cmo01g01271 Cmo-Chr1:10161747 Cmo09g00844 Cmo-Chr9:4321404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01271 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 8.6e-223 770.8
Cmo09g00844 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.2e-218 756.1
Cmo01g01271 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.0 1.0e-228 790.4
Cmo09g00844 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 4.9e-226 781.6
Cmo18g01122 . 4 831 MAP Kinase Kinase Kinase Kinase AT1G69220 57.4 1.2e-231 800.4
Cmo01g01271 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.3e-68 256.1
Cmo09g00844 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 1.1e-67 255.8
Cmo04g02836 CST 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 65.0 2.6e-248 855.5
Cmo15g00350 CST 1 727 MAP Kinase Kinase Kinase Kinase AT5G14720 61.0 4.1e-238 821.6
Cmo16g01274 . 6 143 MAP Kinase Kinase Kinase Kinase AT5G14720 55.0 1.6e-48 191.8
Cmo06g00592 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 6.4e-245 844.3
Cmo16g01271 CST 18 489 MAP Kinase Kinase Kinase Kinase AT4G24100 53.8 6.9e-114 409.1
Cmo16g01274 . 7 143 MAP Kinase Kinase Kinase Kinase AT4G24100 62.6 4.1e-58 223.8
Cmo06g00592 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.8e-242 834.7
Cmo16g01271 CST 18 490 MAP Kinase Kinase Kinase Kinase AT4G10730 54.7 4.1e-116 416.4
Cmo16g01274 . 11 143 MAP Kinase Kinase Kinase Kinase AT4G10730 61.1 6.9e-55 213.0
Cmo01g00200 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.3 2.5e-133 473.4
Cmo06g00592 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.6e-116 417.5
Cmo01g00200 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.1e-218 756.1
Cmo15g00350 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.3e-103 374.4
Cmo04g02836 CST 6 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 2.0e-101 367.1
Cmo01g00200 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.4e-88 322.0
Cmo06g00592 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cmo14g01826 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 1.5e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74050 PF00069 Pkinase 5.80E-69 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01271 Cmo_Chr01 FPKM 16.172178 14.647627 5.230989 5.331633 6.012469 8.335952 6.669091 1.407035 1.959762 1.896008