Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01297 ATGGATTTCCAGGATGATGGCTTTGAGGGTTCTGCGAATGAAGACACTATTTTTAAGGAGGTTTTCTTTGGGAATAGTTCTAGCCACTCCAATAGATGTCCTTGCAAAGCATTTAGTAATAAACATGAGCCGTGGAAGATAAATGATGCATCTTTATGTTCAAGTAGTGAACTCTCGACAGTGTCCAGTCATTCTTATTCAAGAAATATAAAGGTTGATGAATGCTACAATGCTACTGAGAATATTAGGACCGATTCTGCACCGTATAGTTTTCCATGCAAATGCCCTTCAGTGGAAGACAATTATGAGAATGCAAGTGCTAAGCGAATAAAACTTTCAACTGATGAACCTTCTGATTCTATACCCGATCTAGGTAAGGTTATGAACTCATCAGTAATTATAAGAGAATCTGCTTCTACATTCCACGTTGTAGAATCGTCTAGACAGGGTATTGTATCAAGTTGCTACCTGTTAAAGGATTTTATAGAAAGGGACAGCGATCTGGGCGAACCTGATGAACCCAAATGCACGTCGTTGATTTTAGAAGGTCATGAACCCAATATGGTGAATAAAGTTAGTGCTTCGCCTGTTTCTGAAGAGAGCTCAATGACCAGACTCTTGGTAGCAAGTCCTTCCGATACATTCAACGAGAAGTTTGGATCTGCATTACATTTGGAGGTAGGAGAAGCGAAATTTCAATGTCCAGAACTGGACACTTCCTTGAAGACAGATTTGATAAGGGATCCCCGTCCTCTTCTCCACTATCATGTTGTTCACTTACTTATTGCAGCTGGATGGTCTATTGAAAGGCGCAAAAGACCTTGCAGGCGCTATTTAGAAACCGTTTATAGATCACCCCAGCGAAGGCTCTTTCGTGAGTTTCCCAAAGCTTGGAGGGTTTGTGGTGAACTCCTATTTGCTGATAGATGTCGTTTTGTAAAAGAATCTGACATCAAGGAATGGACCGGCATTCATCAATTCTTATTTGATCTTTGTGACACACTGTTACAGGTTGGGAAGGAAATGAATCAACTAGGAGCTTCAACGTCACTTGCTCATTGTTGGGTTATTCTAGATCCCTATGTTCAGGTTGTTTCGATTGACAGAAAGATTGGTACACTTAGGAAGGGAGAATTAGTTAGAGTTACCCGTAATATTAGGGTTATTGGGAACAATAAGACTGATACTTTTGTGACATTAACAAATGAGGATAGTATTTGTAACCTATCTGCTGACAAAAATGCACCTCCACTCCACGATCATTCACCGTCTGCCAAGAGTGCATTAACGGAGGCTGCATTGAAAGATCTCGATGGTGGCAATTGTGCTTCTGATGAGCAAACCTGTGATACAAGTTTATCTAATTACTATGGACATACAAAAGATGGAACAATGAAATTTCCGACAAGGGTGTCTAATTATGTCTCCGACGTAGGGGATGGTATGAATTGCTTGGTCAGTCATTGTAGTGCACTCAAACCAAGATGTCCGCCTCGTGGTCCTGTTCTGTCTGGAAATTCAGATTATGTTATCCCAGTTTCTGGCCCTACATCTCCTTATGAGGACAGCGCTTTGTATAGCTCGGATGAACAGAGCTCTGAAAATCAAGTTGAAAAGCCTAATGAAATGGTGAAAAATGCACTGATGCATTCCCTGGGAGAAGGAAAAAAAGTGGAAGTCCCATTCAATGATAAGATGCAAAATAATCTGGAAGTATCTCTGAATTACTGTCCAAACTATATAAGCGATGATTTATCTCATTCTTGTGCTTCACGGGTCGTACAGAAGTTTACACATAAAGAAGAAGGTGGGCAGCACGTTTCAACTTCAAAGTTCAAAACAGAGAGTAAAGTTTCTGCTGTACATTCTAATTTGCAGAAGAAAGGGCGTAGAAAGTGTAAAAAGATATCTGAAATTAATCCTACCTTGCCACCTCAGACCGATATTGACGTGAGTTGTTCTCAATTGGATATGATAGAATACCAGAAGTCCCATATAGCTGATACGAAAAACATGGACGGTGATGTGAAGTCCTTGTATCTCAGTCCTATTTCATGCCATTCTGAGAGGAAAGGTTCAAAGTTCAAAAAGATTTATGACAGTCTTAGAGGTTCAAAAACGAGAAAGAAGAAATTGAACGAATGTCAAATTGAAGATGATGACCTATTAGTTTCAGCCATAATTAGAAACAAAGATGTCCGTTCGAGTGCTGCTGGATTTTCCCCTGTAAGAAAGTTCTTAAAGCCGAGAGCAAAAACGAACCGCAAAAGGCAAAAGAGTAGTTGTAAGCTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGGAAGTGGTATACCATTGGGGCTAGAACAATCTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGGCATGATCCAATATCGAAACTCTCGGGATAATAGTGTAGTTAAATATGGTAGAATTACTGGAGATGGCATCATCTGCAGTTGCTGCAGTGAGCTACTCTCAATAACTGAATTTAAAAGGCACTCGGGTTCCAAATTTAATCGTCCTTGTTTGAATCTTTACTTGGACTCTGGGAAGCCTTTCATGTTATGCCAGCTTCAAGCGTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACAGTTCAAGTCGATGAAGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGGGGAGAGCTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCTGGAGCTCCCTGAAGGCAACTGGTATTGCTCAAACTGTACATGCCGAATATGTGGTGATCTGGTGAATTATAAAGAGTCGTCGAGTTCTTCTGATGCACTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCGATGCCTGAAAGAAAAAGACATTGATTATGGAGCAGAGTCTCTTATTTGGTTTTGCAGTGAGAGTTGCCATAAGATTTACACAGGTCTTCAGTCTCAACTTGGGTCGATCAATCAGTTTGCTGACGGATTTTCTTGGATGCTTCTTCGATGTATTCATAGTGACCAGAAAATTCTATCGACCCCACGCTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTTACTATAATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTCGTGTACAGCTGGGAGTCGAGTTTTCCTCGTCTGGACTTTCATGGATTTTACACTGTGATACTAGAGAAAGATGATGTGCTGCTCTGTGTAGCATCTATCAGGGTACATGGATCAGAAGTTGCTGAGATGCCCATCATTGCAACTTGTAGTAAATATCGTCGCCAGGGAATGTGTCGGCGTCTACTGAACGCTATAGAACAGATGCTATTGTCCTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACCGAAGGGTTTGGGTTCATACCCGTGGAAGATGTTGAGAAACAAAGTCTTCACCGGTTCAATCTGATGGTGTTTCCTGGGACAGTGCTACTCAAAAAAGCCTTGTATGTAAGTGCTCAAAATTCAGAGAACACACAAGGAACTCGTTCGGATGCTGATTCAAAACAACAATGTGTTTACTCCTGTCCTGATGAAGCACGTCCTAGAATGGAAACGATACGTTTAAAAGATCAAGACTTGCATGAACACGATGAAAAGACGAAGAACGATCACAAGGGAAATCCAGCTCCAATTGATTCATCCACATTGCATTTGGTTGAATCTAATAGAATGGATACTTCCATTCAGTCAACACTACAATCTGATGGAAACTGTTGCACTGACGAAGTTCGAGCCACGACCCATGAGTCGAAAGAGTCGTTAGAACAGGACGTTGAGCTTCCAGAAGGAAAGAGCTGGGATAACGAAGTTCACGTAGCCACTATGACGAGATTAGTCGAACCTTTTGTACTAACTTAG 3990 41.03 MDFQDDGFEGSANEDTIFKEVFFGNSSSHSNRCPCKAFSNKHEPWKINDASLCSSSELSTVSSHSYSRNIKVDECYNATENIRTDSAPYSFPCKCPSVEDNYENASAKRIKLSTDEPSDSIPDLGKVMNSSVIIRESASTFHVVESSRQGIVSSCYLLKDFIERDSDLGEPDEPKCTSLILEGHEPNMVNKVSASPVSEESSMTRLLVASPSDTFNEKFGSALHLEVGEAKFQCPELDTSLKTDLIRDPRPLLHYHVVHLLIAAGWSIERRKRPCRRYLETVYRSPQRRLFREFPKAWRVCGELLFADRCRFVKESDIKEWTGIHQFLFDLCDTLLQVGKEMNQLGASTSLAHCWVILDPYVQVVSIDRKIGTLRKGELVRVTRNIRVIGNNKTDTFVTLTNEDSICNLSADKNAPPLHDHSPSAKSALTEAALKDLDGGNCASDEQTCDTSLSNYYGHTKDGTMKFPTRVSNYVSDVGDGMNCLVSHCSALKPRCPPRGPVLSGNSDYVIPVSGPTSPYEDSALYSSDEQSSENQVEKPNEMVKNALMHSLGEGKKVEVPFNDKMQNNLEVSLNYCPNYISDDLSHSCASRVVQKFTHKEEGGQHVSTSKFKTESKVSAVHSNLQKKGRRKCKKISEINPTLPPQTDIDVSCSQLDMIEYQKSHIADTKNMDGDVKSLYLSPISCHSERKGSKFKKIYDSLRGSKTRKKKLNECQIEDDDLLVSAIIRNKDVRSSAAGFSPVRKFLKPRAKTNRKRQKSSCKLLLRSLGNGEKNYKDGKWYTIGARTILSWLLDAGVISSNGMIQYRNSRDNSVVKYGRITGDGIICSCCSELLSITEFKRHSGSKFNRPCLNLYLDSGKPFMLCQLQAWSTEYKTRRSRTRTVQVDEDRNDDSCGICGDGGELICCDNCPSTFHHSCLSILELPEGNWYCSNCTCRICGDLVNYKESSSSSDALKCSQCEQKYHGRCLKEKDIDYGAESLIWFCSESCHKIYTGLQSQLGSINQFADGFSWMLLRCIHSDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWESSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSEVAEMPIIATCSKYRRQGMCRRLLNAIEQMLLSFKVKKLVIAAIPSLVETWTEGFGFIPVEDVEKQSLHRFNLMVFPGTVLLKKALYVSAQNSENTQGTRSDADSKQQCVYSCPDEARPRMETIRLKDQDLHEHDEKTKNDHKGNPAPIDSSTLHLVESNRMDTSIQSTLQSDGNCCTDEVRATTHESKESLEQDVELPEGKSWDNEVHVATMTRLVEPFVLT 1329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10302045 10309707 + CmoCh01G012970.1 Cmo01g01297 374780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01297 1329 Gene3D - 1065 1179 - -
Cmo01g01297 1329 ProSiteProfiles Zinc finger PHD-type profile. 893 938 IPR019787 -
Cmo01g01297 1329 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1082 1169 IPR016181 -
Cmo01g01297 1329 PANTHER INCREASED DNA METHYLATION 1 2 1297 IPR031086 -
Cmo01g01297 1329 SUPERFAMILY FYVE/PHD zinc finger 877 936 IPR011011 -
Cmo01g01297 1329 MobiDBLite consensus disorder prediction 1235 1250 - -
Cmo01g01297 1329 Pfam Tify domain binding domain 819 869 IPR032308 -
Cmo01g01297 1329 CDD PHD1_AIRE 896 935 - -
Cmo01g01297 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 885 937 IPR013083 -
Cmo01g01297 1329 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1029 1193 IPR000182 GO:0016407
Cmo01g01297 1329 SMART PHD_3 895 936 IPR001965 -
Cmo01g01297 1329 SMART PHD_3 937 990 IPR001965 -
Cmo01g01297 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 938 994 IPR013083 -
Cmo01g01297 1329 Pfam PHD-finger 896 937 IPR019787 -
Cmo01g01297 1329 PANTHER PHD FINGER FAMILY PROTEIN 2 1297 - -
Cmo01g01297 1329 CDD NAT_SF 1087 1147 - -
Cmo01g01297 1329 SUPERFAMILY FYVE/PHD zinc finger 936 990 IPR011011 -
Cmo01g01297 1329 MobiDBLite consensus disorder prediction 1235 1256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01297 - - - bhj:120086236 2037.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01297 Cmo09g00807 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01297 Cmo-Chr1:10302045 Cmo08g00335 Cmo-Chr8:2071298 1.34E-122 dispersed
Cmo02g01395 Cmo-Chr2:8267192 Cmo01g01297 Cmo-Chr1:10302045 2.64E-10 dispersed
Cmo01g01297 Cmo-Chr1:10302045 Cmo09g00807 Cmo-Chr9:4133852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9105 PF16135 TDBD 7.50E-16 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01297 Cmo_Chr01 FPKM 31.617912 32.670742 53.816494 57.145519 30.172537 28.309683 30.275331 104.886169 113.796196 109.349258