Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01299 ATGTCGCATTCTCTCAATCCCATTTCGGACTACGACCATCTCTCCGATCGCTTTCGTGATTCCCTCAGTTGTGAACCCAACAAGCCTGATTTTCGCGACCTAGATCTGGGTTCCCCTGTTTCGCCATTACGAACTCGGAACCAGACTGGTGGCGGCCCTGCTGCGAGTAGTAGTTCCAGCTCGTCCGGGTCGGTTTCTGGCCGGAATGCAACGAACCCAGTTGCCAAAAGATCTGATTCGGGTCCTAATAATCATTCCGGTGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCGGCGGAGAGCCTCCGATCCATTGGGACTCCTAGGAATTTCAAGTCTGGTCATACTAGATCCGATTCTGGATCGAGTCATCCGTTAATCTATTCGGGTCAGTCTCAAACCTCTGTTACTTCCCCGTCGAATGTGCTTCCCACCGGTAATATTTGCCCTTCTGGAAGGGTTTTGAAAACGAGCATGCCGTCGACCAACCGGAGTTCGAGATCCGATGTTTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGTATAATGCGGGGCCTCGGCGGTGTTAAAACCGGCGGCGTTGAATCGGTTAGTAATGTTAGCTCGAGGGCTGGTTGTGGTGGTGGTGGTGACTCGCTGAAGAGGGCGAAACAGAGTGGGGATCCAGAGGAGTTGAAGAGAGCTGGAAATGAACAATACAAAAAGGGGCATTTTGCTGAAGCTTTGAGTCTCTATGATCGAGCCATTGCGGTTTCCCCGGCCAATGCAGCTTACCGGAGCAACCGTGCTGCTGCCTTGACCGGCCTCAGGCGGCTTGGCGAGGCGGTAAGCGAGTGCGAGGAGGCGGTAAGATTGGATCCCAATTATGTGAGGGCTCATCAGCGTTTGGCATCCTTGTTTCATAGGTTAGGACATGTAGAGAATGCCAGGAAACATCTTTGTTTTCCAGGCGTTCAGCCTGATCCGAGCGAGCTGCTGAGACTGCAGGCAGTCGAAAGGCATATAAGCAAATGCAGGGATGCCCGTCGACTCAAAGATTGGCGAAGCGTATTGAAGGAGGCCGATGCTGCGATTGCCGGTGGAGCTGATTCTTCGCCTCAGCTGTTTATGAGTAAAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCCAGCTTATTAAGCATTCCGAAGTTACATCCATCGATTAATACGTGCTTACAAATGAAGTTTTTCGGGATGATTTCGGAAGCTTACTCTCATTTCATTCATGCCCAAATCGAGATGGCGTTAGGAAGGTATCTTCGAAAGTCCGATTTCGAAACGGTTTTGAGAGCGTGGGAATTGGATAATGGATATGTTGCAGTTACGGCTGCTGAGAAAGCTGCACAGATTGATCCTCGAAATGTAGAAGTGGCAATGCTGCTTAGTAACGTGCGGTTGGTTGCACGAGCTCGTACTCGAGGCAACGATCTCTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCATATGGGGAAGGACTTAAGCTTGATCATTCGAACTCGGTCCTCTACTGCAATCGAGCAGCCTGTTGGTTTAAACTCGGGATGTGGGAGCGGTCTATCGAAGACTGTAATCAAGCGTTACTTATCCAACCGACTTACACGAAGGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGACACGATACCTCCTGCTGCATTCTTCATACGTGATACCTCGTTTTTGTTTCTATAACTCGGTTTTGGATCGACTGCAGCTCGAAAGATGGGAGGATGCTATACGAGATTACGAAGCTTTAAGGAGGGAACTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTTCATGCTCAAGTCGCGTTAAAGAAATCACGTGGTGAAGAAGTTCATAATCTGAAGTTCGGTGGCGAAGTCGAGGTGGTTTCCAGCATAGATCAGTTCCGAGCTGCGATATCGTTCCCAGGCGTGACTGTTGTTCATTTCAAAGTAGATTCCGATATACAATGCAAGCAGATATCGCCATTCGTCGACATCCTTTGTCGTCGCTATCCTTCCATTAATTTCCTCAAGGTAAGATGTCTGTCTTCTTCGCTTCATCTCGACAATGTCGGTTTACAACGAACGTTACGCAAAGATGTGAATCTGGAAGATAGTCCAGCAATTGCAGATACCGAAAACGTAAGGATCGTACCGACGTTCAAGATTTACAAAAGTGGAAACCGAGTAAAAGAGATCATATCTCCGACTCATGACATGTTAGAGTACTCAGTGAGGTATTATAGCTTCTTATAG 2292 48.25 MSHSLNPISDYDHLSDRFRDSLSCEPNKPDFRDLDLGSPVSPLRTRNQTGGGPAASSSSSSSGSVSGRNATNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPRNFKSGHTRSDSGSSHPLIYSGQSQTSVTSPSNVLPTGNICPSGRVLKTSMPSTNRSSRSDVLGSGSGNYGHGSIMRGLGGVKTGGVESVSNVSSRAGCGGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAVSPANAAYRSNRAAALTGLRRLGEAVSECEEAVRLDPNYVRAHQRLASLFHRLGHVENARKHLCFPGVQPDPSELLRLQAVERHISKCRDARRLKDWRSVLKEADAAIAGGADSSPQLFMSKVEALLKLHQIEDAESSLLSIPKLHPSINTCLQMKFFGMISEAYSHFIHAQIEMALGRYLRKSDFETVLRAWELDNGYVAVTAAEKAAQIDPRNVEVAMLLSNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDHSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKTRYLLLHSSYVIPRFCFYNSVLDRLQLERWEDAIRDYEALRRELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEVVSSIDQFRAAISFPGVTVVHFKVDSDIQCKQISPFVDILCRRYPSINFLKVRCLSSSLHLDNVGLQRTLRKDVNLEDSPAIADTENVRIVPTFKIYKSGNRVKEIISPTHDMLEYSVRYYSFL 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10325223 10328850 + CmoCh01G012990.1 Cmo01g01299 374782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01299 763 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 760 IPR044534 -
Cmo01g01299 763 MobiDBLite consensus disorder prediction 41 176 - -
Cmo01g01299 763 MobiDBLite consensus disorder prediction 10 32 - -
Cmo01g01299 763 Pfam Tetratricopeptide repeat 516 547 IPR001440 GO:0005515
Cmo01g01299 763 SUPERFAMILY TPR-like 223 477 IPR011990 GO:0005515
Cmo01g01299 763 MobiDBLite consensus disorder prediction 218 234 - -
Cmo01g01299 763 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 760 - -
Cmo01g01299 763 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Cmo01g01299 763 Gene3D Glutaredoxin 625 758 - -
Cmo01g01299 763 MobiDBLite consensus disorder prediction 1 179 - -
Cmo01g01299 763 SMART tpr_5 514 547 IPR019734 GO:0005515
Cmo01g01299 763 SMART tpr_5 258 291 IPR019734 GO:0005515
Cmo01g01299 763 SMART tpr_5 224 257 IPR019734 GO:0005515
Cmo01g01299 763 SMART tpr_5 480 513 IPR019734 GO:0005515
Cmo01g01299 763 SUPERFAMILY Thioredoxin-like 517 754 IPR036249 -
Cmo01g01299 763 CDD TRX_family 645 746 - -
Cmo01g01299 763 Gene3D Tetratricopeptide repeat domain 222 563 IPR011990 GO:0005515
Cmo01g01299 763 Gene3D Tetratricopeptide repeat domain 577 624 IPR011990 GO:0005515
Cmo01g01299 763 MobiDBLite consensus disorder prediction 202 234 - -
Cmo01g01299 763 Pfam Tetratricopeptide repeat 230 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01299 - - - csv:101208569 1169.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01299 Cmo09g00809 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01299 Cmo-Chr1:10325223 Cmo11g01965 Cmo-Chr11:13522487 0 dispersed
Cmo01g01299 Cmo-Chr1:10325223 Cmo19g01061 Cmo-Chr19:9208784 0 wgd
Cmo01g01299 Cmo-Chr1:10325223 Cmo09g00809 Cmo-Chr9:4160541 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01299 Cmo_Chr01 FPKM 2.083102 1.522661 3.036021 1.523037 3.953486 4.630114 3.917036 3.581988 4.268211 4.171736