Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01318 ATGTTTTCGGCTCCTTCTCTCACCGTCGCTTTTCTCGTATCTCTCTGCTTCATTACCCTCGCGTCCGGCGCTACTCGCCTCCCGGCCGACGAAGTCGAGGCGCTGAGGGAGATCGGAAAGACGTTGGGGAAGACGGACTGGAATTTCGACGCCGATCCATGCGGCGGCGTTAGCAGCGGTTGGATATCGACTTCTGCACAATTCGACCCTAATTTTGACAATAAAGTCATCTGCGACTGTACGTTCCAGAACAATACCGTCTGTCACGTCACTAACATTCTGCTAAAGGCGCAGAACCTTCCAGGTACTCTGCCACCGCAAATAGTGAGGCTGCCATTCCTGCGGCAACTTGATCTCACCCGCAACTTCCTCAGCGGCCCAATCCCTCCAGAATGGGGTTCCACCAAGCTCCTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTTCAATACCAAAAACGATTGGAAACATCAGCACTCTTGTAGAGTTGGTCTTGGAAATGAATCATTTATCTGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGCTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGCGATAATAACTTCACAGGGCCAATACCAAAGTTTGTACAGAATTGGACGGCTCTTGGGAAACTAGCAATTCAGGCGAGCGGATTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAACTTAACTGATGTGAGAATCAGTGATTTGAATGGAGGTTCATCACCCTTTCCGCCCCTTAATACTTTGACAAAATTGAAAACCTTGATATTGAGGAGTTGCAATATAGCTGGAGGGCTACCGGACAATCTTGCTGGGTTGACAGCGTTGAAAACCTTAGACTTCAGCTTCAACAAAATTACAGGAGCAATACCTGTCAGCTTTGAAGCTTTGAAAAAAGTGGATAGCATATATTTAACTGGAAACTTGCTAAATGGATCGGTGCCCACTTGGATGCTACAGCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTACTCAGAGAAATGGCCAGAACACTGGTTGTCAATCTCGAAATTTCGGAACAGTTTCATGTTTACCAAGCACTTGTGGAAGAACTTCGTACTCTCTCCATATCAACTGTGGTGGGAAGGAAGAATTAATTAACGGAACAACCACATATGTTGCAGACATAAACACTGGCAAATCATCATTGTTTTTCCAAGGTGGAGAAAATTGGGGATTTAGTAGCACTGGTAATTTTATGGATGACGATCGCTCAACAGACGACTTTATTGCATTAAATATATCTGCTCTCTCAATGCCAAATCCTGAATTGTACGTGAGGGCACGTATTTCACCAATTTCTCTTACTTACTATGCATATTGCATGGGTAGTGGAAACTACACAGTAAGCCTCCATTTCGCTGAGATAGCGTTTACCAATGACAAATCTTATAGAAGCCTCGGCAGACGCTTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCTGCAGGTGGTATTGGCAAACCTATTGTAAAGAAATTCACCGTTCCTGTGACTAATGGTACTATAGAGATTCGCCTATTTTGGACCGGGAAGGGGACAACTGCAATCCCTGTGAGAGGGGTATATGGTCCTTTGATTTCTGCCATTTCGGTTGATCCTGACTTTGTGCCACCATCAGAAGGTGGAAAGGGCATATCTGCTGGTGCAGTGGCTGGAATTGTGGCTGCTGCTGTTATCTTTGTTATCATCTTTGTTCTTGGAGTCTTGTGGTGGTTAGGCTGCCTACGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTCCATTAAGACAAATTCGAGCTGCCACGAACAATTTTGACGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTGTTCTTCAAGATGGCACTGTAATTGCAGTGAAGCAACTTTCTTCCAAGTCGAAGCAAGGAAATCGCGAATTTGTGAATGAAATAGGCATGATATCTGCATTGCAACACCCTCATCTAGTCAAGCTTCATGGATGCTGTATTGAAGCAAATCAACTTTTGCTAGTATACGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTGTTCGGACCTGAAGAATTCCAACTGAAACTGGATTGGGCAACTAGGCAGAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCGAGACTAAAGATTGTTCATCGAGACATCAAAGCTACCAACGTTTTGCTCGATAAAAATCTCAACCCCAAGATTTCTGACTTTGGTTTGGCGAAGCTGGACGAAGAAGAAAATACACACATCAGCACGCGGGTTGCTGGAACCTTTGGGTATATGGCACCAGAATATGCCATGCGGGGCTACTTAACCGACAAAGCAGATGTTTACAGCTTTGGCATTGTGGCTTTGGAAATAGTCAGTGGTCGAAGCAACACAAGTTACCGAACCAAGGATGATTGCTTTTACCTTCTAGACCATGCTAATACTCTAAAGGAGAAGGACAGTTTACTAGAGCTTGTGGATATGCGGTTAGGCTCCGAATTCAACAAGCGAGAGGCGATGACGATGATCACTGTTGCTCTACAATGCACGAACGTCATTGCTGCAGACCGACCTACGATGTCATCCGTGGTGAGCATGCTGGAAGGGAAGATTGCCGTAAAGGAGGTGGTTTCAGATCCTAGTGTCTCAAAACAAGATATGAACGCAATGTGGAGCCAAATCTATCGGCAGAAAGGGGAGGGCCAGACGCAAAGTATGTCGATGGACGGTCCGTGGACTGGTTCTTCAACTACTGCCAGTGATCTCTACCCCATCAACATGGATTCTAAATACTTGGAGAATAGGAACTAA 2988 44.61 MFSAPSLTVAFLVSLCFITLASGATRLPADEVEALREIGKTLGKTDWNFDADPCGGVSSGWISTSAQFDPNFDNKVICDCTFQNNTVCHVTNILLKAQNLPGTLPPQIVRLPFLRQLDLTRNFLSGPIPPEWGSTKLLNISLLGNRLTGSIPKTIGNISTLVELVLEMNHLSGSLPPELGNLPSLSRLLLTSNNFSGELPSSLARIASLTDFRISDNNFTGPIPKFVQNWTALGKLAIQASGLSGPIPSEIGLLTNLTDVRISDLNGGSSPFPPLNTLTKLKTLILRSCNIAGGLPDNLAGLTALKTLDFSFNKITGAIPVSFEALKKVDSIYLTGNLLNGSVPTWMLQQGESIDLSYNKFTTQRNGQNTGCQSRNFGTVSCLPSTCGRTSYSLHINCGGKEELINGTTTYVADINTGKSSLFFQGGENWGFSSTGNFMDDDRSTDDFIALNISALSMPNPELYVRARISPISLTYYAYCMGSGNYTVSLHFAEIAFTNDKSYRSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPIVKKFTVPVTNGTIEIRLFWTGKGTTAIPVRGVYGPLISAISVDPDFVPPSEGGKGISAGAVAGIVAAAVIFVIIFVLGVLWWLGCLRKKSTLEQELKGLDLGTGSFPLRQIRAATNNFDAANKIGEGGFGPVYKGVLQDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEANQLLLVYEYLENNSLARALFGPEEFQLKLDWATRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRTKDDCFYLLDHANTLKEKDSLLELVDMRLGSEFNKREAMTMITVALQCTNVIAADRPTMSSVVSMLEGKIAVKEVVSDPSVSKQDMNAMWSQIYRQKGEGQTQSMSMDGPWTGSSTTASDLYPINMDSKYLENRN 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10470993 10479624 + CmoCh01G013180.1 Cmo01g01318 374801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01318 995 Gene3D Ribonuclease Inhibitor 269 385 IPR032675 -
Cmo01g01318 995 SMART serkin_6 655 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01318 995 SUPERFAMILY L domain-like 78 362 - -
Cmo01g01318 995 Gene3D Phosphorylase Kinase; domain 1 622 730 - -
Cmo01g01318 995 CDD STKc_IRAK 661 928 - -
Cmo01g01318 995 Gene3D Ribonuclease Inhibitor 28 268 IPR032675 -
Cmo01g01318 995 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Cmo01g01318 995 Gene3D - 389 581 - -
Cmo01g01318 995 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 77 951 - -
Cmo01g01318 995 Pfam Protein tyrosine and serine/threonine kinase 658 926 IPR001245 GO:0004672|GO:0006468
Cmo01g01318 995 Pfam Malectin domain 393 577 IPR021720 -
Cmo01g01318 995 MobiDBLite consensus disorder prediction 959 980 - -
Cmo01g01318 995 Gene3D Transferase(Phosphotransferase) domain 1 731 947 - -
Cmo01g01318 995 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 951 - -
Cmo01g01318 995 ProSiteProfiles Protein kinase domain profile. 655 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01318 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Cmo01g01318 995 SUPERFAMILY Protein kinase-like (PK-like) 639 951 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01318 Cmo-Chr1:10470993 Cmo09g00654 Cmo-Chr9:3265759 0 dispersed
Cmo01g01316 Cmo-Chr1:10421966 Cmo01g01318 Cmo-Chr1:10470993 2.62E-120 proximal
Cmo01g01318 Cmo-Chr1:10470993 Cmo01g01319 Cmo-Chr1:10480953 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74052 PF07714 PK_Tyr_Ser-Thr 9.60E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01318 - - cpep:111787659 1615.9