Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01319 ATGTTTTTGGCTCCATTTCTCTCCCGCCTTTTACTCCTCTCTCTCTGCTTCATTTCCCTCGCTTCCGGCGCTGCTCGGCTGCCGGACGACGAAGTTGAGGCCTTGAGGGAGATCGGTAAGACATTGGGGAAGACGGACTGGAATTTCGACGCCGATCCATGCGGCGGTGTTAGCAGCGGTTGGGTTTCGGATTCTCCGCAGTTCGACCCTAATTTTACTAATAATGTCACCTGCAACTGCACGTTCCTGAACAATACCGTCTGTCACGTCACCAACATTAGTCTGAAGGCGCAGAGTCTTCCAGGTACTCTGCCACCGCAAATAGTGAGGCTGCCTTTCCTGCAGGAACTTGATCTTACCCGCAACTATCTCAGCGGCTCAATCCCTCCAGAATGGGGTTCCACCAATCTCCTCAAAATTTCGCTTCTTGCAAATCGGTTGACGGGTCCAATCCCAGAAGCGATTGGAAACATCAGCTCTCTTGCAGAGTTGGTCCTGGAAATGAATCAATTCTCTGGAAGTTTACCCACAGAACTTGGAAATTTGACCAGCTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAACCTCATTGACGGACTTTCGAATTAGTGATAACCACTTCACAGGGCAAATACCTAAGTTTGTACAGAATTGGACGGCTCTTACAAAAATAGCTATTCAGGCAAGCGGGTTGGATGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGTGATTTGAATGGAGATTCATCACCCTTTCCACCCCTTAATACATTGACAAAATTGAAAACCCTGATTTTGAGGAGTTGCAATATAACTGGGGTGCTACCGGACAATCTTGATGGGTTGACACTGTTGAAAACCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGACAGCTTTGAAGCTTTAAAAAAAGTGGATAGCATATATTTAACTGGAAACATGCTAAATGGATCGGTGCCTGTTTGGATGCTACAGCAAGGAGAGAGCATTGATCTCTCTTATAACAAATTTACTCCAATCAATAGTGAGAACACTGGTTGTCAATCACGAAATTTAAACCTGTTTGCGAGCTCTTCCCAGGACAACAGTTCCGGTGGAACAGTTTCATGTATACCGAGCACTTGTGAAAGAACTTCGTACTCTGTCCATATCAACTGTGGTGGGAAGGAAGAATCAATCAACGGAACAACCAAATTTGATGCAGACACAAACACTGGAAAATCATCACTGTTTTTCTCCGGTGCAGAAAATTGGGGATTTAGTATCACTGGTAATTTTATGGACGACGATCGCACAACAGACGATTTTATTGCATTAAATTCATCTGCTCTCACAATGCCAAATCCTGAATTGTACGTGAGGGCACGTATTTCACCAATTTCTCTTACTTACTATGCACATTGCTTGGGTAGTGGAAACTACACAGTAAGCCTCCATTTTGCTGAGATAGTGTTTACTAATGACAAAACGTTTCGAAGCCTGGGCAGACGATTATTTGATGTCTACGTTCAGGTACATATCGATATCGGAAAGCTAGAGTTGAAGGATTTTAATATTGCAGATGCAGCCGGCGGTGTTGGCAAAGCTTTTATAGCGAAATTCCCTGTTTCTGTGACTAATGGTACTATAGAAATCCGGCTATATTGGGCTGGGAAGGGGACAACTGCAGTCCCTCAGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTCGAGCCACCATCAGAAGAGTCGTCGCCACGATCAAAAGGTGGAGGGAATGGCATATCCGCCGGTGCAGTGGTTGGAATTGTTGCTGGTATGATCGTAGTTTTCATCTTGGTTCTTGGAATCTTGAGATGGAAAGGCTGCCTAAGAAAGAAAACCCCACGTGAACAAGGTTTTTACGACAAGGTTCTGTCGATGGACTGGTCTAGTGAATTGGAAGAACCTCTTTTCTACATTTTTGGATTGATTTCAGTGGAGGCGTTGAAGGAGATCGGAAAGAGGTTGGGGAAGACGGACTGGCATTTCAACGTCGATCCATGCGGCGGAGTTAGCAGCGGTTGGATATCGAATCCGACGCCGTTCGACACTAATTTTAATAATACCGTCATCTGCAACTGCACCTTCCAGAACAATACTGTCTGCCACGTCACCAACATTCTTCTCAAGGGGCAGAGCCTTCCTGGTACTCTGCCACCGGAAATAGTGCGGCTGCCTTTCCTGCAGGAGCTTGATCTCACCCGCAATTATCTCAACGGCTCAATTCCTGAAGAATGGGGTTCCACCAATCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACGGGTTCAATCCCAGCAGCGATTGGAAACATCAGCACTCTTGTAGACTTGGTCCTGGAAATGAATCATTTCTCTGGAAGTTTACCCCCAGAACTTGGAAATTTGCGTAGTTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGTGTTAGTGATAATCACTTCACAGGGTCAATTCCTAATTTTATACAGAACTGGACGAATCTTACAAAAATAGTAATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGTGATTTGAATGGAGATTCATCACCCTTTCCACCCCTTAATACTTTGACAAAATTGACAAACCTGATATTGAGGAGTTGCAATATAACTGGGGTACTACCAAACAATCTTGATGTGTTGACAGCGTTGAAAACCTTATATTTAACTGGAAACTTGCTAAATGGACCAGTGCCCACATGGATGCTACAGGAAGGGGAAAGCATTGATATAAAAATGAAAGTTCGTTTGTACACACTTAATGATGTAAGGGAAGGGCAAGTTTATGTTCTTGCTATCTGGAAGATAATAAATCTGATTGTTGTTCTTTTTCACAGTGATCTCTCTTATAACAAATTTACTCTGAGCAATAGTGAGAACACTGGCTGTCAATCACGAAATTTAAACCTGTTTGCAAGCTCTTCCCAGGACAACAGTTCCGGTGGAACAGTTTCATGTCTACCCAGCACTTGTAGAACTTCGTACTCTCTCCATATCAACTGTGGTGGGAAGGAATTAATTAACGGAACAACCACATTTGTTGCAGACGCAGACACTGGCAAATCATCATTGTTTTTCCAACGTGTAGAAAATTGGGGATTTAGTAGCACTGGTAATTTTATGGACGACGCTCGCTCAACAGACGACTTTATTGCATTAAATATATCCGCTCTCTCGATGCCAAATCCTGAATTGTACGTGACGGCACGTATTTCACCGATTTCTCTTACTTACTATGCATATTGCATGGGTAGTGGAAACTACACAGTAGGCCTCCATTTCGCTGAGATAGCGTTTACTAATGACACATCTTATAGAAGCCTTGGCAGACGCTTATTTGATGTCTATGTTCAGGGAAAGCTGAAGTTGAAGGATTTTAATATTGCAGATGCTGCAGGTGGTATTGGCAAACCTATTGTAAAGAACTTCACCGTTCCTGTGACTAATGGTACTATAGAGATTCGCCTATTTTGGGCCGGGAAGGGGACAACTGCAATCCCTGTGAGAGTGGTTTATGGTCCTTTGATTTCTGCCATTTCGGTTGATCCTGACTTTGAGCCACCATCAGAAGGTGGGAAGGACATATCTGCCGGTGCTGTGGTTGGAATTGTGGCTGGAATTGTGGCTGCTGTGATCTTTGTTATCATCTTTGTTCTTGGAGTCTTGTGGTGTGGAGGCTGCCTACAAAAGAAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAAGTTCATTTTCATTAAGACAAATCAGAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTGTTCTTCAAGATGGCACTGTAATCGCAGTGAAGCAACTTTCTTCCAAGTCGAAGCAAGGAAATCGCGAATTTGTGAACGAAATAGGCATGATATCTGCATTGCAACACCCGCATCTAGTGAAGCTTTACGGATGTTGTGTCGAAGGAAATCAACTTTTGCTAATATACGAATATCTCGAAAATAATAGCCTTGCTCGTGCCTTATTCGGACCTGAAGAATTTCAACTGAAACTGGATTGGCCAACCAGGCACAAAATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTAAAGATTGTTCACCGAGACATCAAAGCTACCAATGTTCTGCTTGATAAAAATCTCAACCCCAAGATTTCGGACTTCGGTTTGGCCAAGCTGGACGAAGAAGAAAATACGCACATTAGCACCCGGATTGCGGGTACCTTTGGATATATGGCACCGGAATATGCCATGCGAGGCTACTTAACTGACAAGGCAGATGTTTACAGCTTTGGCATCGTAGCCTTGGAGATACTGAGCGGTCGAAGTAACACAATTTTCCGAACCAAGGATGATTGCTTTTACCTTCTTGATCATGCTAATACTTTAAAAGAGGGAGACCGTTTGTTAGAGCTTGTCGATCCACGGTTAGGTTCGGAATACAACCAGAGAGAGGCAATGACGATCATCGATATTGCTTTCCGATGTACGAACAACACTGCTGCAGTTAGACCTACCATGTCATCAGTGGTGAGCATGCTGGAAGGGAAGGTTGCTGTGAAGGAGGTGGTTTCAGATCCTAGTGTCTCGAAACAAGAAGTGAATACGACGTGCGTTTATTACCAGAAAGGGCAAACTACAGACGAGAGTCGGATACAAAATATGTCGATAGATGGACCGTGGACTGGTTCGTCAACTACTGGCAGTGATCTCTATCCCATGCTCCTGGATTCTATATACTTGGAGGATAGGAACTAG 5025 43.62 MFLAPFLSRLLLLSLCFISLASGAARLPDDEVEALREIGKTLGKTDWNFDADPCGGVSSGWVSDSPQFDPNFTNNVTCNCTFLNNTVCHVTNISLKAQSLPGTLPPQIVRLPFLQELDLTRNYLSGSIPPEWGSTNLLKISLLANRLTGPIPEAIGNISSLAELVLEMNQFSGSLPTELGNLTSLSRLLLTSNNFSGELPSSLARITSLTDFRISDNHFTGQIPKFVQNWTALTKIAIQASGLDGPIPSEIGLLTKLTDVRISDLNGDSSPFPPLNTLTKLKTLILRSCNITGVLPDNLDGLTLLKTLDFSFNKITGPIPDSFEALKKVDSIYLTGNMLNGSVPVWMLQQGESIDLSYNKFTPINSENTGCQSRNLNLFASSSQDNSSGGTVSCIPSTCERTSYSVHINCGGKEESINGTTKFDADTNTGKSSLFFSGAENWGFSITGNFMDDDRTTDDFIALNSSALTMPNPELYVRARISPISLTYYAHCLGSGNYTVSLHFAEIVFTNDKTFRSLGRRLFDVYVQVHIDIGKLELKDFNIADAAGGVGKAFIAKFPVSVTNGTIEIRLYWAGKGTTAVPQRGVYGPLISAISVDPDFEPPSEESSPRSKGGGNGISAGAVVGIVAGMIVVFILVLGILRWKGCLRKKTPREQGFYDKVLSMDWSSELEEPLFYIFGLISVEALKEIGKRLGKTDWHFNVDPCGGVSSGWISNPTPFDTNFNNTVICNCTFQNNTVCHVTNILLKGQSLPGTLPPEIVRLPFLQELDLTRNYLNGSIPEEWGSTNLLKISLLGNRLTGSIPAAIGNISTLVDLVLEMNHFSGSLPPELGNLRSLSRLLLTSNNFSGELPSSLARIASLTDFRVSDNHFTGSIPNFIQNWTNLTKIVIQASGLSGPIPSEIGLLTKLTDVRISDLNGDSSPFPPLNTLTKLTNLILRSCNITGVLPNNLDVLTALKTLYLTGNLLNGPVPTWMLQEGESIDIKMKVRLYTLNDVREGQVYVLAIWKIINLIVVLFHSDLSYNKFTLSNSENTGCQSRNLNLFASSSQDNSSGGTVSCLPSTCRTSYSLHINCGGKELINGTTTFVADADTGKSSLFFQRVENWGFSSTGNFMDDARSTDDFIALNISALSMPNPELYVTARISPISLTYYAYCMGSGNYTVGLHFAEIAFTNDTSYRSLGRRLFDVYVQGKLKLKDFNIADAAGGIGKPIVKNFTVPVTNGTIEIRLFWAGKGTTAIPVRVVYGPLISAISVDPDFEPPSEGGKDISAGAVVGIVAGIVAAVIFVIIFVLGVLWCGGCLQKKSTLEQELKGLDLGTSSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLQDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCVEGNQLLLIYEYLENNSLARALFGPEEFQLKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEILSGRSNTIFRTKDDCFYLLDHANTLKEGDRLLELVDPRLGSEYNQREAMTIIDIAFRCTNNTAAVRPTMSSVVSMLEGKVAVKEVVSDPSVSKQEVNTTCVYYQKGQTTDESRIQNMSIDGPWTGSSTTGSDLYPMLLDSIYLEDRN 1674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10480953 10497953 + CmoCh01G013190.1 Cmo01g01319 374802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01319 1674 Gene3D Transferase(Phosphotransferase) domain 1 1408 1625 - -
Cmo01g01319 1674 SUPERFAMILY L domain-like 715 973 - -
Cmo01g01319 1674 Gene3D Ribonuclease Inhibitor 229 386 IPR032675 -
Cmo01g01319 1674 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 555 - -
Cmo01g01319 1674 CDD STKc_IRAK 1338 1605 - -
Cmo01g01319 1674 Gene3D Ribonuclease Inhibitor 39 159 IPR032675 -
Cmo01g01319 1674 Gene3D Ribonuclease Inhibitor 160 228 IPR032675 -
Cmo01g01319 1674 Gene3D - 1064 1255 - -
Cmo01g01319 1674 Gene3D - 401 598 - -
Cmo01g01319 1674 Gene3D Phosphorylase Kinase; domain 1 1298 1407 - -
Cmo01g01319 1674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1454 1466 IPR008271 GO:0004672|GO:0006468
Cmo01g01319 1674 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 78 555 - -
Cmo01g01319 1674 SUPERFAMILY L domain-like 83 362 - -
Cmo01g01319 1674 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Cmo01g01319 1674 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 729 1635 - -
Cmo01g01319 1674 SMART LRR_typ_2 953 977 IPR003591 -
Cmo01g01319 1674 SMART LRR_typ_2 302 325 IPR003591 -
Cmo01g01319 1674 SMART LRR_typ_2 762 786 IPR003591 -
Cmo01g01319 1674 SMART LRR_typ_2 111 135 IPR003591 -
Cmo01g01319 1674 SMART LRR_typ_2 278 301 IPR003591 -
Cmo01g01319 1674 SUPERFAMILY Protein kinase-like (PK-like) 1316 1629 IPR011009 -
Cmo01g01319 1674 Pfam Protein tyrosine and serine/threonine kinase 1335 1603 IPR001245 GO:0004672|GO:0006468
Cmo01g01319 1674 Gene3D Ribonuclease Inhibitor 856 1057 IPR032675 -
Cmo01g01319 1674 SMART serkin_6 1332 1603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01319 1674 Pfam Malectin domain 1068 1251 IPR021720 -
Cmo01g01319 1674 Pfam Malectin domain 405 594 IPR021720 -
Cmo01g01319 1674 Gene3D Ribonuclease Inhibitor 699 855 IPR032675 -
Cmo01g01319 1674 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 729 1635 - -
Cmo01g01319 1674 ProSiteProfiles Protein kinase domain profile. 1332 1618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01319 Cmo-Chr1:10480953 Cmo09g00654 Cmo-Chr9:3265759 0 dispersed
Cmo01g01319 Cmo-Chr1:10480953 Cmo01g01321 Cmo-Chr1:10500011 0 proximal
Cmo01g01318 Cmo-Chr1:10470993 Cmo01g01319 Cmo-Chr1:10480953 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74053 PF07714 PK_Tyr_Ser-Thr 3.20E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01319 - - cpep:111787659 2930.97