Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01321 ATGTTCATGTCTAGAACACTCTTGTTCTTCTTGTTCTTGTTCTTCATTGCTGGGATCCAATCCCAGTCCACCAGATTGCCTGCTGATGAAGTGGAGGGTTTAAAGGAAATAGGAAAGATTCTGGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAATGGCGACCATGGATGGATTTCTCAGCCCAACCAAATCCCCAAGAACGTTTCTGATTTTCAAAACAATCTTACCTGTGATTGCGCCTTTCTCAATGCCACGATCTGCCATGTCATCAGCATAGCTCTCAAATCGCAGAGCCTTCAAGGCACTCTCCCGCCCGATCTTGTTCGCTTGCCCTTTCTGCAGCAAATTGATCTCAGTCGGAACTATCTCAGCGGTCAAATTCCATCGGAATGGGGCTCTACGAATCTCGTCAATATTTCCCTGCTTGGAAATCGGCTGACGGGTTTGATTCCAGAGGAGATTGGAAACATCACTACTCTAGAAAATTTGGTCCTGGAAATCAATCAGCTGTCAGGAAGCATTCCTCAAGCGCTTGGAAACTTGCCCCAGTTACAGAGATTACATCTTACCTCGAACAACTTCTCTGGGAAGTTGCCGATGTCACTGGGAAAGCTGACCACATTGAAGGAATTTCGAATCGGTGACAATAACTTCTCGGGTCCAATACCGAACTTCATACGTAATTGGACAAATCTTACTGAACTATCCATTCAGGCAAGTGGATTAAGTGGGCCAATTCCTTCAGACATTGGACTATTGACAAAATTATCTGACTTGAGAATCAGTGACTTGAGTGGAGCTCCATCACCCTTTCCACGTCTTCGTAATTTGGAAGACATCACAATTCTGATATTGAGAAGTTGCAATATCACTGGAAGGCTGCCCAATTTTCTGGATAGGATGCCATCCTTAAGAATCTTAGACCTCAGCTTCAACAAACTAAGTGGGCAAATTCCGACCAGATTTAATGCTCTTAAAGGGTTGGATAACATATTTTTAACTGGAAATATGCTGAATGGATCAGTGCCTGATTGGATGTTGAAAGGAAACGGCATCGATCTTTCCTATAATAATTTTACAGTCGAGGTGGCTGGGGAAAGCTGTCGGTCTCAAAAAGTGAACCTCTTTGCCAGCTCTTCACAAGACAGTGATTATGGAATTCTTTCATGTTTAGCAGGCTCGTCCTGTTCAAAAACTTGGTACTCTCTTCATATAAACTGTGGTGGGAAGGAACAAACCATAAATGGTACAGTTTTTAAAGGAGACCGAAATACAGGCAGCTCTATGTTCTTTGTAACTGGAACAAATTGGGCAATCAGCAACACTGGCAGTTTTTTGGATGATGGTGAAACTCGAGATGAATACAGTGCAACTAATTCTTCTACTCTTTCTATGACAAATCCTGAACTGTACATGACTGCACGCATTTCTCCATTATCTGTTACTTACTATGGGTTTTGTATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACGTTCAGTAGTCTCGGCAGACGCTTATTCAACGTTTATATTCAGAAAGAACTTGTCCTAGAGGATTTCAATATAGTGGATGCAGCAGGTGGTGTTGGTAAAGCAGTCATAAGAAAAATCCCAGTTACCGTGACAAATGGTACGCTGGAGATCCGCTTCTATTGGGCCGGGAAGGGGACAAATGCTATTCCTGTGAGGGGAGTTTATGGCCCTCTTATATCAGCTATATCAGTAGATCCTGACTTCGAGGCTCCATCCGAAGGTGGAGAAACTGGAAAATCTGGCATATCTGTAGGTGCAGTGGTAGGAATTGCAGCTGCTTCAGTGTTTGTTATATTATTGGTTCTCGGAATCCTGTGGTGGCGTGTATGTCTACAACGGGAAAAGACACTCGAACAAGAGTTACGAGGTTTGGATTTGCAAACTTGTTCTTTTACATTAAGGCAAATAAAAGCCGCCACAAACAATTTTGATGCTGCCAATAAGCTTGGAGAAGGTGGTTTCGGTTCTGTCTATAAGGGTGTTCTTACGGATGGTACGGCAATTGCAGTAAAACAACTGTCTTCAAAATCAAAGCAAGGAAATCGCGAGTTCGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTATTGAAGGAAATCAGCTCTTGTTAGTATATGAATACATGGAAAACAATAGCCTTGCCCATGCCTTGTTTGGTCAAGAAGGAAGTGAACTAGAATTGGATTGGCCAACAAGGCACAAGATCTGTGTTGGTATAGCAAGAGGTTTGGCTTATCTTCATGAAGAGTCCAGACTAAAGATTGTCCACAGAGATATCAAAGCTACTAATGTTCTGTTAGACAAAGAGCTAACCCCCAAGATATCAGACTTCGGCTTGGCCAAGCTCGATGAAGAAGAGAAGTCCCATATAAGTACTCGAATCGCTGGAACTTTTGGATACATGGCACCGGAATATGCAATGCGAGGGCACTTGACTGATAAAGCAGATGTTTATAGCTTTGGTGTTGTGGCTTTAGAAATAGTTAGCGGAAGGAGCAACACGACTTTGTGGGCAAATAGCGACGGCTCTTATCTTCTAGATTCGGCACTGAAGTTGAAAGAGAAAAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCCCCAACTTCAACAAGGGAGAGGCATTGAGAATGATAAAAATTGCTCTCCATTGCACTAATATCTCTCCTGCAGCAAGACCTAACATGTCATCAGTAGTGAGCATGCTGGAAGGCAAGCAGGATATTGAGGGCATAGTGTTGGATTCTAGTGTCACTAAAGGATCAATAAACACAGCATGGACTCGTTTATTGGAGGACGCTGAGCAATCGAAGTACGGTTTGTTTGGCGATGTCTCGGCAACAGGTTCTTCTACATCTGCAGTCGATCTCTATCCGATTAACACTGGGCTGAAGCATGAAAACTCTAACTCAGAGTCTATGAACATTGGAATCCTAGAGCAAGAAAGCTTTGTTTCTTTGTAG 3069 42.82 MFMSRTLLFFLFLFFIAGIQSQSTRLPADEVEGLKEIGKILGKRDWNFSADPCNGDHGWISQPNQIPKNVSDFQNNLTCDCAFLNATICHVISIALKSQSLQGTLPPDLVRLPFLQQIDLSRNYLSGQIPSEWGSTNLVNISLLGNRLTGLIPEEIGNITTLENLVLEINQLSGSIPQALGNLPQLQRLHLTSNNFSGKLPMSLGKLTTLKEFRIGDNNFSGPIPNFIRNWTNLTELSIQASGLSGPIPSDIGLLTKLSDLRISDLSGAPSPFPRLRNLEDITILILRSCNITGRLPNFLDRMPSLRILDLSFNKLSGQIPTRFNALKGLDNIFLTGNMLNGSVPDWMLKGNGIDLSYNNFTVEVAGESCRSQKVNLFASSSQDSDYGILSCLAGSSCSKTWYSLHINCGGKEQTINGTVFKGDRNTGSSMFFVTGTNWAISNTGSFLDDGETRDEYSATNSSTLSMTNPELYMTARISPLSVTYYGFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRLFNVYIQKELVLEDFNIVDAAGGVGKAVIRKIPVTVTNGTLEIRFYWAGKGTNAIPVRGVYGPLISAISVDPDFEAPSEGGETGKSGISVGAVVGIAAASVFVILLVLGILWWRVCLQREKTLEQELRGLDLQTCSFTLRQIKAATNNFDAANKLGEGGFGSVYKGVLTDGTAIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLAHALFGQEGSELELDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKELTPKISDFGLAKLDEEEKSHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTTLWANSDGSYLLDSALKLKEKNSLMELVDPRLGPNFNKGEALRMIKIALHCTNISPAARPNMSSVVSMLEGKQDIEGIVLDSSVTKGSINTAWTRLLEDAEQSKYGLFGDVSATGSSTSAVDLYPINTGLKHENSNSESMNIGILEQESFVSL 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10500011 10509344 + CmoCh01G013210.1 Cmo01g01321 374804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01321 1022 Pfam Malectin domain 404 586 IPR021720 -
Cmo01g01321 1022 Gene3D Ribonuclease Inhibitor 194 264 IPR032675 -
Cmo01g01321 1022 Gene3D Ribonuclease Inhibitor 265 384 IPR032675 -
Cmo01g01321 1022 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Cmo01g01321 1022 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 78 293 - -
Cmo01g01321 1022 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 291 346 - -
Cmo01g01321 1022 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 383 968 - -
Cmo01g01321 1022 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 291 346 - -
Cmo01g01321 1022 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 383 968 - -
Cmo01g01321 1022 Gene3D Ribonuclease Inhibitor 46 193 IPR032675 -
Cmo01g01321 1022 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01321 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Cmo01g01321 1022 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 293 - -
Cmo01g01321 1022 CDD STKc_IRAK 673 940 - -
Cmo01g01321 1022 Gene3D - 402 590 - -
Cmo01g01321 1022 ProSiteProfiles Protein kinase domain profile. 667 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01321 1022 Gene3D Transferase(Phosphotransferase) domain 1 743 952 - -
Cmo01g01321 1022 SUPERFAMILY Protein kinase-like (PK-like) 652 940 IPR011009 -
Cmo01g01321 1022 SUPERFAMILY L domain-like 73 348 - -
Cmo01g01321 1022 Gene3D Phosphorylase Kinase; domain 1 632 742 - -
Cmo01g01321 1022 Pfam Protein tyrosine and serine/threonine kinase 670 938 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01321 Cmo-Chr1:10500011 Cmo09g00654 Cmo-Chr9:3265759 0 dispersed
Cmo01g01319 Cmo-Chr1:10480953 Cmo01g01321 Cmo-Chr1:10500011 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74054 PF07714 PK_Tyr_Ser-Thr 2.50E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01321 - - csv:101220843 1436.4