Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01325 ATGGTTAATAATTTAACTCTTGAGAAAGATTGGTGTTATGATTCAAGTGTAACTGAAAGAAATTCAGTTCTGTTTTGGACCCCAGTTTTGCAGAATACTTGTGACCCTGTTAGAAAATACTTGCAAAAGAGATGGAAGCTTGATTGTTTTTCATCATATTGTTTCTCTCTTCTTCTTTTTTTTCTTTTTATTGCATGTCAGGAGGCGCAGTTTGTCGTCTCTTCTTTTAATACCTTTTGCTTGATTTTTGCTGGTGCTGCGCAATCTCTGGGTGCTGGGGCACTTTTGGTCAACCCTTGGAACATAACAGAAGTCGCAAAATCCATCGAGCGAGCATTAAAGATGGGTGCTGAAGAAAGAGAAAAGCGCCATTGGCATAATTTTCTTCATGTGACAACACACACTGCCCAGGAATGGGCTGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATTAGACAATGTCCACCCCCGCTTCCATTTGACAATGCAATGAAACGTTATGAGCAATCTACTAATCGATTACTCATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACTCCTGAAAGAAGAGGCGATCAGATTAGAGAAATGGATCTGAAACTACACCCGGATTTGAAAGAACCATTGACGGCGATTTGCAACGACCCCAATACGACAGTGGTCATTCTCAGTGGGAGCGATAGAACAGTGTTGGATGATAACTTTGGGGAGTATGATATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGAGGTGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCACGTTTTTGAGTACTTCACAGAAAGAACTCCCCGTTCCCATTTTGAACTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCCGTTGAAGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTTTACACATTCTTTGAGCCTGAACTACCATCGGATACCATAGGCATGGCAAGATCAAAGGGAACTGACGGACTTAAGTTAACGGGGGAGAGAAGATCTTCCATCAAAGTTCCTGCAAGTAGGAACGGATCGACATCGCCTCACAATAAGGCGCGGTCGAACCTGGAGAAGAAAACTTCAAATCATAATTGTGCAAACGGTCGTAAACCATCACCGGAGAAGATTCAATGGAATGTGCTCGATCTCCAGGCTGAGAACTACTTCTCTTGTGCCGTCGGACGATCTCGGACAAATGCTCGATATATGCTCGGATCATCAGATGATGTGGTGGCATTCCTAAAGGAGTTGGCAAGTGCAAAGTCATTTTCTTGA 1551 43.07 MVNNLTLEKDWCYDSSVTERNSVLFWTPVLQNTCDPVRKYLQKRWKLDCFSSYCFSLLLFFLFIACQEAQFVVSSFNTFCLIFAGAAQSLGAGALLVNPWNITEVAKSIERALKMGAEEREKRHWHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPPLPFDNAMKRYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKLTGERRSSIKVPASRNGSTSPHNKARSNLEKKTSNHNCANGRKPSPEKIQWNVLDLQAENYFSCAVGRSRTNARYMLGSSDDVVAFLKELASAKSFS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10538104 10542100 + CmoCh01G013250.1 Cmo01g01325 374808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01325 516 MobiDBLite consensus disorder prediction 428 443 - -
Cmo01g01325 516 Gene3D Glycogen Phosphorylase B; 83 133 - -
Cmo01g01325 516 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 59 510 IPR001830 GO:0003824|GO:0005992
Cmo01g01325 516 Gene3D - 207 367 IPR023214 -
Cmo01g01325 516 Pfam Trehalose-phosphatase 206 415 IPR003337 GO:0003824|GO:0005992
Cmo01g01325 516 SUPERFAMILY HAD-like 180 510 IPR036412 -
Cmo01g01325 516 PANTHER BNAA02G18920D PROTEIN 59 510 - -
Cmo01g01325 516 Gene3D - 273 353 - -
Cmo01g01325 516 CDD HAD_TPP 181 401 - -
Cmo01g01325 516 Gene3D Glycogen Phosphorylase B; 134 145 - -
Cmo01g01325 516 Pfam Glycosyltransferase family 20 83 148 IPR001830 GO:0003824|GO:0005992
Cmo01g01325 516 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 83 151 - -
Cmo01g01325 516 MobiDBLite consensus disorder prediction 409 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01325 Cmo-Chr1:10538104 Cmo04g00298 Cmo-Chr4:1483665 1.30E-38 dispersed
Cmo01g01325 Cmo-Chr1:10538104 Cmo18g00419 Cmo-Chr18:2755285 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01325 K16055 - csv:101204478 841.647