Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01329 ATGGATTCCCTCCATGCCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACTAGAACGAAAGCAGCAAGAACAGGATCAATCTCTCCATTCTTGTTCCCTCCCTGCGAAGAAGCGAAAGGAGTCTCGTGATTCATCAATCTTTATCCCCGATGCTACATTACCCAACCCAATCGCCATTTCCGCTTCTACTTACTGCTTGCCGACGAAGAAAAGAGTCTGGGCGTTTCATCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAAGAAATATCGATTTCAGAAGTAGAATCAGAGATAGAGGAAAAAGAGAAAAACGAAAAGGAAAAGGAAAGTTCTGATGTTGAGATTGAGCATCAAGAGATTGAAGCTATCCAAGAAGAAGAAGAAGAAGAAGAAGATGAGGATGAAGAGGACGGAATCCTCTGTGCGATTTGTCAAAGCACGGATGGAGACCCATCCGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGCTACGGCAATCCTCTGGTGAAGAATGTACCAGAAGGTGATTGGTTCTGTACCCAATGCTTAGCTTCTTCGTCTTCCGAGATGGAGAAGAAAGCTTCTGAAACACCATTTTCATGCTGTCTTTGTCCTCTCAAAGGAGGGGCAATGAAGCCAACAAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAAGTGTTCTTCGAAGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTCAAAAGGAGATGGAAATCTAAATGCTATATCTGCAAAACCTCTGAAGGTTGTGCCATTGATTGTTCGGAGGCTAAATGCAGTTTAGGTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGCATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAAAAGCCACACTGATTTGTGGAAGAAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAAGTAAGTAA 1044 44.16 MDSLHALPPLKRLRILQELERKQQEQDQSLHSCSLPAKKRKESRDSSIFIPDATLPNPIAISASTYCLPTKKRVWAFHPDFAPESLDLNVEYKPPPEEISISEVESEIEEKEKNEKEKESSDVEIEHQEIEAIQEEEEEEEDEDEEDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCTQCLASSSSEMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSEGCAIDCSEAKCSLGFHVTCGLKEDLCIEYQEGRRSGAIVAGFCKSHTDLWKKQQLTGKFKIVARDESK 347
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 10562944 10564493 + CmoCh01G013290.1 Cmo01g01329 374812
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01329 347 ProSiteProfiles Zinc finger PHD-type profile. 148 201 IPR019787 -
Cmo01g01329 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 104 346 - -
Cmo01g01329 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 110 - -
Cmo01g01329 347 MobiDBLite consensus disorder prediction 21 50 - -
Cmo01g01329 347 SUPERFAMILY FYVE/PHD zinc finger 137 204 IPR011011 -
Cmo01g01329 347 SMART PHD_3 271 326 IPR001965 -
Cmo01g01329 347 SMART PHD_3 150 199 IPR001965 -
Cmo01g01329 347 Pfam PHD-zinc-finger like domain 216 313 - -
Cmo01g01329 347 Coils Coil 101 147 - -
Cmo01g01329 347 MobiDBLite consensus disorder prediction 99 125 - -
Cmo01g01329 347 Pfam PHD-finger 151 199 IPR019787 -
Cmo01g01329 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 328 IPR013083 -
Cmo01g01329 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 212 IPR013083 -
Cmo01g01329 347 CDD PHD_BRPF_JADE_like 150 198 - -
Cmo01g01329 347 MobiDBLite consensus disorder prediction 106 125 - -
Cmo01g01329 347 ProSiteProfiles Extended PHD (ePHD) domain profile. 214 326 IPR034732 -
Cmo01g01329 347 PANTHER PHD FINGER PROTEINS 104 346 - -
Cmo01g01329 347 PANTHER PHD FINGER PROTEINS 3 110 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo01g01329 Cmo09g00663 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01329 Cmo-Chr1:10562944 Cmo08g00100 Cmo-Chr8:508906 1.56E-29 dispersed
Cmo01g01329 Cmo-Chr1:10562944 Cmo09g00663 Cmo-Chr9:3323131 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9106 PF13832 zf-HC5HC2H_2 2.90E-29 CL0390 Cmo TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01329 K11380 - csv:101203744 530.406