Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g01329 | ATGGATTCCCTCCATGCCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACTAGAACGAAAGCAGCAAGAACAGGATCAATCTCTCCATTCTTGTTCCCTCCCTGCGAAGAAGCGAAAGGAGTCTCGTGATTCATCAATCTTTATCCCCGATGCTACATTACCCAACCCAATCGCCATTTCCGCTTCTACTTACTGCTTGCCGACGAAGAAAAGAGTCTGGGCGTTTCATCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAAGAAATATCGATTTCAGAAGTAGAATCAGAGATAGAGGAAAAAGAGAAAAACGAAAAGGAAAAGGAAAGTTCTGATGTTGAGATTGAGCATCAAGAGATTGAAGCTATCCAAGAAGAAGAAGAAGAAGAAGAAGATGAGGATGAAGAGGACGGAATCCTCTGTGCGATTTGTCAAAGCACGGATGGAGACCCATCCGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACATGCTTCGTGCTACGGCAATCCTCTGGTGAAGAATGTACCAGAAGGTGATTGGTTCTGTACCCAATGCTTAGCTTCTTCGTCTTCCGAGATGGAGAAGAAAGCTTCTGAAACACCATTTTCATGCTGTCTTTGTCCTCTCAAAGGAGGGGCAATGAAGCCAACAAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAAGTGTTCTTCGAAGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTCAAAAGGAGATGGAAATCTAAATGCTATATCTGCAAAACCTCTGAAGGTTGTGCCATTGATTGTTCGGAGGCTAAATGCAGTTTAGGTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGCATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAAAAGCCACACTGATTTGTGGAAGAAGCAACAATTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAAGTAAGTAA | 1044 | 44.16 | MDSLHALPPLKRLRILQELERKQQEQDQSLHSCSLPAKKRKESRDSSIFIPDATLPNPIAISASTYCLPTKKRVWAFHPDFAPESLDLNVEYKPPPEEISISEVESEIEEKEKNEKEKESSDVEIEHQEIEAIQEEEEEEEDEDEEDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCTQCLASSSSEMEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSEGCAIDCSEAKCSLGFHVTCGLKEDLCIEYQEGRRSGAIVAGFCKSHTDLWKKQQLTGKFKIVARDESK | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 10562944 | 10564493 | + | CmoCh01G013290.1 | Cmo01g01329 | 374812 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g01329 | 347 | ProSiteProfiles | Zinc finger PHD-type profile. | 148 | 201 | IPR019787 | - | |
| Cmo01g01329 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 104 | 346 | - | - | |
| Cmo01g01329 | 347 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 110 | - | - | |
| Cmo01g01329 | 347 | MobiDBLite | consensus disorder prediction | 21 | 50 | - | - | |
| Cmo01g01329 | 347 | SUPERFAMILY | FYVE/PHD zinc finger | 137 | 204 | IPR011011 | - | |
| Cmo01g01329 | 347 | SMART | PHD_3 | 271 | 326 | IPR001965 | - | |
| Cmo01g01329 | 347 | SMART | PHD_3 | 150 | 199 | IPR001965 | - | |
| Cmo01g01329 | 347 | Pfam | PHD-zinc-finger like domain | 216 | 313 | - | - | |
| Cmo01g01329 | 347 | Coils | Coil | 101 | 147 | - | - | |
| Cmo01g01329 | 347 | MobiDBLite | consensus disorder prediction | 99 | 125 | - | - | |
| Cmo01g01329 | 347 | Pfam | PHD-finger | 151 | 199 | IPR019787 | - | |
| Cmo01g01329 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 328 | IPR013083 | - | |
| Cmo01g01329 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 212 | IPR013083 | - | |
| Cmo01g01329 | 347 | CDD | PHD_BRPF_JADE_like | 150 | 198 | - | - | |
| Cmo01g01329 | 347 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Cmo01g01329 | 347 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 214 | 326 | IPR034732 | - | |
| Cmo01g01329 | 347 | PANTHER | PHD FINGER PROTEINS | 104 | 346 | - | - | |
| Cmo01g01329 | 347 | PANTHER | PHD FINGER PROTEINS | 3 | 110 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g01329 | Cmo09g00663 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01329 | Cmo-Chr1:10562944 | Cmo08g00100 | Cmo-Chr8:508906 | 1.56E-29 | dispersed | |
| Cmo01g01329 | Cmo-Chr1:10562944 | Cmo09g00663 | Cmo-Chr9:3323131 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9106 | PF13832 | zf-HC5HC2H_2 | 2.90E-29 | CL0390 | Cmo | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g01329 | K11380 | - | csv:101203744 | 530.406 |