Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01331 ATGGACTGCGAAGTGAATGAAAGCGAGGAATACTCGCTGCTCAAGAATCTGAGGCTCGAAATCGATGGAGATGATGGGTGTTTTAATATCTGTTTTTGGGTTTATCTTATGAATTCTTCCACATTCCCCGTTTCAATCCTTCAGGTACAGTTAGATTCATCAGGCATGAGTTCTTTTCTGGTTCTAAGTGAAAGGAATAGAATTAAGATTATGCCTTTGCCCGCCTTACACAAACCCGATGAACGTTCCAGCGCTGGTAGTTCTTCTTCCGGGAATGAAGTTCCACATGAATGTCTAGACATCGATTTTCCCATGGAAAAATGGGTTCATATTGGATGTGAGGTCTCCACCGATTTTGTCCGACTGCATATTAATGGGAAAATGGTTGGAGAAAAGCCTATGTCATCTTCACTCGGTGAAGATGCCATTCCAAGGGGTTCGGGTAGGATTGTTTTGGTCAACAATGGTGAAGACAACAGCCTGCAAGGCTATGTTCATAATGCAAAAGTTTTGCATTCGGTATCATCGATCAAGGATTCTTATGTCGAGGACCTACCCGTTAAATTATTTATCGACAACTCTTCGACCACGGAGATTGAAGAGGGCAGTGATGGCATATGGAATATAGTTGGTGGCAAGCCATCTTGTCGTCGAAATTTCTCATTGGAAGTTATGCTGTTAGATTCCTCTGGCCAGCCTGTTCTTAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGGAAGCTGTGGAGAAGTCAAGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTGTTGAATTTGCTTCCAGTGATAGACCAAAACACGAGCATGTTTCAATAGATGAAGAAAAACCAAGTCCACTATTGAAGAGGATTAAAGTGGGACAAGATAGAGTTTTACCGAACTCTAACGACGATCGTGCTTTACGGCAACCCGATGAGGAATGCAACTCTCATTCTTTTACTGCCAATGAGGCTGAAAATGGATTTGGCACAAATTTAAGAGAGAGACCCAAAAATAATGGATCAAGAAGAGCATCCCCATCAGACTCTGCAAGCACTCAAGCCAGACATTTGGCTCCGAATAGAACTACAACCAGTGGAAACCCGATATCGGATGTGAACATTTTCAAATATTGCCTAGCAGGTTTACCTGAGAGGTCACATCTGCTCAAGGAGATTGCAACATCCGTGTCGCAGGAAGAAGTTTCGGAATTTGCCGACCATGTTTCCCTATATTCTGGATGTTTACACCACAGGCATCAAATCCTAATGTCAAGAAAATTAATAGAAGAGGGAATTCGGGCCTGGAATTCAATATCTCAAAACAAGCATCATGTTCAGTGGGAGAGTGTTGCTTTTGAGATTGAAGAACAGTTCATGAGAATTTCTGGCTGTAGCTCTAGATCTCTCACTCAGCAGGACGTCGAGTTGCTGCGGAGAATTTCTGGTTGTCACGAGTATCTGGCTCGAGAGAACTTCGAGAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACTTTATCCAAACAATGGATCAATGCAATGTGGAGTTCTTTATCGCCCAAATGGATCGAAGGATTCATTACGAAAGAAGAAGCCGAATTATCGCTTCAAAGTCCGACGGGTCTTCAAGAGCCTGGGACGTTTATTCTTCGGTTTCCCACTTCGAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTAGTCACCTATGTTGGCAATGACTATTCTCTTCATCATAGACTTCTTACACTTGATCACTTTTTCAGTTCTGCTGAAGGAAAGAAGAATATGAGAAGCCTTCAGGACATGCTTCTTGCAGAACCCGAGCTCTCTCGATTGGGAAGACATCTCCCAGTTAAGTTGCGTACATATTGCACATACCGGAGTCGTTTTGGAACGAATATTTACAGGCATGTCGGAGCCACTCGAGAACTAAGATTTAAAAGATCTCTGCCTCTTCCTCCAATGGCGAAAGCAGCCGCAGTCGCTCTCTCCTTTCTGCTTCTGTTCCTCTCAGGAGATCTCTTGGCGGTAAATGGATATCAGAAGACGTGGTGCGTTGCGAGGCCTTCGTCGGATCACGCGACGCTGTTAGCGAATATCAATTATGCTTGTTCACAAGTGGATTGCAGGATTATGCAGAAAGGATGCCCCTGCTTTTATCCTGATAATCTGATTAACCATGCCTCCATCGCTATGAATCTGTATTACAATTCGAAAGGGAAGAATCAGTGGAACTGTGATTTCAGAGGATCTGGTCTCATCGTCATCACTGATCCAAGTTATGGGAACTGCCTTTACCCTTGA 2328 43.9 MDCEVNESEEYSLLKNLRLEIDGDDGCFNICFWVYLMNSSTFPVSILQVQLDSSGMSSFLVLSERNRIKIMPLPALHKPDERSSAGSSSSGNEVPHECLDIDFPMEKWVHIGCEVSTDFVRLHINGKMVGEKPMSSSLGEDAIPRGSGRIVLVNNGEDNSLQGYVHNAKVLHSVSSIKDSYVEDLPVKLFIDNSSTTEIEEGSDGIWNIVGGKPSCRRNFSLEVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSSDEEAPLLASYDGVEFASSDRPKHEHVSIDEEKPSPLLKRIKVGQDRVLPNSNDDRALRQPDEECNSHSFTANEAENGFGTNLRERPKNNGSRRASPSDSASTQARHLAPNRTTTSGNPISDVNIFKYCLAGLPERSHLLKEIATSVSQEEVSEFADHVSLYSGCLHHRHQILMSRKLIEEGIRAWNSISQNKHHVQWESVAFEIEEQFMRISGCSSRSLTQQDVELLRRISGCHEYLARENFERMWCWLYPVAFTLSKQWINAMWSSLSPKWIEGFITKEEAELSLQSPTGLQEPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYSLHHRLLTLDHFFSSAEGKKNMRSLQDMLLAEPELSRLGRHLPVKLRTYCTYRSRFGTNIYRHVGATRELRFKRSLPLPPMAKAAAVALSFLLLFLSGDLLAVNGYQKTWCVARPSSDHATLLANINYACSQVDCRIMQKGCPCFYPDNLINHASIAMNLYYNSKGKNQWNCDFRGSGLIVITDPSYGNCLYP 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10568061 10578870 + CmoCh01G013310.1 Cmo01g01331 374814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01331 775 Gene3D SH2 domain 515 639 IPR036860 -
Cmo01g01331 775 Pfam X8 domain 691 760 IPR012946 -
Cmo01g01331 775 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 172 IPR013320 -
Cmo01g01331 775 Gene3D - 686 772 - -
Cmo01g01331 775 MobiDBLite consensus disorder prediction 320 342 - -
Cmo01g01331 775 MobiDBLite consensus disorder prediction 301 373 - -
Cmo01g01331 775 SMART X8_cls 691 774 IPR012946 -
Cmo01g01331 775 CDD SH2_SHA 518 622 - -
Cmo01g01331 775 MobiDBLite consensus disorder prediction 349 373 - -
Cmo01g01331 775 SUPERFAMILY SH2 domain 525 611 IPR036860 -
Cmo01g01331 775 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 625 IPR001217 GO:0003700|GO:0006355|GO:0007165
Cmo01g01331 775 ProSiteProfiles Src homology 2 (SH2) domain profile. 529 611 IPR000980 -
Cmo01g01331 775 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01331 - - - fve:101298500 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01331 Cmo09g00669 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01331 Cmo-Chr1:10568061 Cmo04g01092 Cmo-Chr4:5530049 4.22E-20 dispersed
Cmo01g01331 Cmo-Chr1:10568061 Cmo09g00669 Cmo-Chr9:3340757 2.24E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g2 . . . . . . . . . . Cma01g01278 . Car01g01093 Car09g00605 Sed04g2513 Cpe06g00537 . Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . Csa04g00829 . .
Vvi19g8 . . . . . . . . . . Cma01g01278 . Car01g01093 . Sed04g2513 . Cpe02g00647 Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . Cla11g01671 Cam11g1737 Cec11g1763 Cco11g1764 Clacu11g1896 Cmu11g1707 Cre11g2121 . . Cone14ag1013 . Lsi04g01965 Csa04g02244 . . . . . . Bpe11g00430 . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g01331 Cmo_Chr01 FPKM 4.745652 6.543818 12.810546 12.583236 4.717018 6.532818 4.036446 13.204926 14.88283 15.895417