Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01381 ATGGCGTCAAGTGTTGATGAAGATGGTAGGGAGCCAGCCATGGAGTCTGGAGAATCTGAGGAAGGAATTGTTGTGCGGGAAGTCTGTGCAAATGGGGTCTCCATAAAAACAACAGAAGTAGAAGCAAAACTCGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCCCTCAATTCTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATCTAGAAGGTGCACTACGTGTGTTCGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGTATTGCTGAGAAGACACCTCCAAAAAAAGGACGTTCGCGCTCTGATTCTCAGCCTGCAGTTTCACAGCATGCTGCAAGCCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGACGCCATAGAGAAGATATTCCAACAAGGAATTCCTGACGGGCAAGTGGATGATAGATTGCAAGAGACTGTCAATCAGGCTGTTGAACTCCTCCCTGAGCTGTGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGGCGTGCTCTCTTAAACCAATGGAACCTCAGTAATGACAGCTATGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGACGCTGGTCCTCCTAGTCTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGCTTCTTGTGAAGGAATGTTTCCTTGGTAATACAAAATGGGATCCATCCGTGATGGAGCACCTAATATTTGCTCTATCCTCATGCAGACAGACTTCTGTTTTAGCAAAACAATTTGAAGAGGTCATGCCTGGGGTATATCGCCGTGTAGATCGTTGGAAGTATTTAGCTCTTTGTTATTGTGCAGCAGGACAGAACAAAGTTGCCTTGAATCTTCTGAGAAAGACTCTACACAAACACGAGCAACCAGGCGATGTAGCAGCCTTATTACTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTAGCTGCTGAAGGTGTTGAATACGCCCAGCGGGCAATGAATAATTGTACAGGAGATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCATGTTAGGTCTTTGCTTGGGAAAACAAGCCAAAATTTCTTCCTCTGACTTCGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCTGCAAATGGTCTGGAGAGAAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAGTATTCGGAATATCGGAATTTGAATGCTGCATTGCAATATGCAAAGAAGTTCATTGATGAAACCGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTCGCTCTTGTTTTGTCTGCCCAAAAGAGATTTCCAGAGGCTGAAGTGGTCACTGACGCTGCAATGGATGAGACCACAAAATGGGAACGAGGACCACTTCTCAGACTCAAGGCAAAGCTGAAAATCTCTCAATCATTACATATGGATGCTATTGAAACATACCGTTATCTCCTTGCATTAGTTCAAGCACAAAAGAAATCCTTTGGACCGCTCAGAATCGTCCCTCAGGTTGAAGATGATAAATTGAATGAATTTGAAGTTTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAAGAGCTGAAAGAGTTCTCCCCAGAATTACTACACACTGAAGGTCTAATGCACCAAGGATGTGAGAAAATACAGGAAGCCCTAGCTGCATACATTAACGCTCTTCTACTTGAACCAACTTACGTTCCTTGCAAGGTTTTGATTGGTGCTATTTGGTCGAAAGCAGGCCCGGATGCGTTGCCTATAGCAAGAGGCTTACTTTCCGACGCATTGAGATTAGATCCGACCAACGGTAAGGCTTGGTTGTACTTGGGGGTGATCCATAGGGACGAAGGACGAATGGCTGATGCTGTAGACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATCGAAAGCTTCAGCAGTATTCTATAG 2127 44.38 MASSVDEDGREPAMESGESEEGIVVREVCANGVSIKTTEVEAKLDEGNIQEAESSLREGLSLNSEEARALLGKLEYQRGNLEGALRVFDGIDLQAAIQRLQPCIAEKTPPKKGRSRSDSQPAVSQHAASLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAIEKIFQQGIPDGQVDDRLQETVNQAVELLPELWKQAGCFQEAISAYRRALLNQWNLSNDSYARIQKGFAVFLLYSGVDAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKECFLGNTKWDPSVMEHLIFALSSCRQTSVLAKQFEEVMPGVYRRVDRWKYLALCYCAAGQNKVALNLLRKTLHKHEQPGDVAALLLAAKICSEDPYLAAEGVEYAQRAMNNCTGDEEHLKGVGLRMLGLCLGKQAKISSSDFERSRLQSEALKSLEAANGLERNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFPEAEVVTDAAMDETTKWERGPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPELLHTEGLMHQGCEKIQEALAAYINALLLEPTYVPCKVLIGAIWSKAGPDALPIARGLLSDALRLDPTNGKAWLYLGVIHRDEGRMADAVDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10874312 10880596 - CmoCh01G013810.1 Cmo01g01381 374864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01381 708 Gene3D Tetratricopeptide repeat domain 36 230 IPR011990 GO:0005515
Cmo01g01381 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Cmo01g01381 708 PANTHER PROTEIN NPG1 14 707 IPR043376 -
Cmo01g01381 708 Gene3D Tetratricopeptide repeat domain 648 704 IPR011990 GO:0005515
Cmo01g01381 708 SUPERFAMILY TPR-like 318 492 IPR011990 GO:0005515
Cmo01g01381 708 MobiDBLite consensus disorder prediction 8 22 - -
Cmo01g01381 708 SUPERFAMILY TPR-like 44 265 IPR011990 GO:0005515
Cmo01g01381 708 SUPERFAMILY TPR-like 512 696 IPR011990 GO:0005515
Cmo01g01381 708 Pfam Tetratricopeptide repeat 668 700 IPR019734 GO:0005515
Cmo01g01381 708 PANTHER CALMODULIN-BINDING PROTEIN 14 707 - -
Cmo01g01381 708 SMART tpr_5 316 349 IPR019734 GO:0005515
Cmo01g01381 708 SMART tpr_5 472 505 IPR019734 GO:0005515
Cmo01g01381 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Cmo01g01381 708 SMART tpr_5 666 699 IPR019734 GO:0005515
Cmo01g01381 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Cmo01g01381 708 Pfam Tetratricopeptide repeat 42 89 - -
Cmo01g01381 708 MobiDBLite consensus disorder prediction 1 22 - -
Cmo01g01381 708 Gene3D Tetratricopeptide repeat domain 505 647 IPR011990 GO:0005515
Cmo01g01381 708 Gene3D Tetratricopeptide repeat domain 291 504 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01381 Cmo-Chr1:10874312 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo01g01381 Cmo-Chr1:10874312 Cmo09g00716 Cmo-Chr9:3547046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01381 K21843 - csv:101206641 1269.6