Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01399 ATGGCCTTCTATACGGTAAAATGGCAATGGCTACTGATTCTTTACATTGTACCGCTTTTCACGATAATGAGCAGAAGCAGCGGTACCAGTTCTGATGGTGAGGCACTTTTGAGCTTCAGAGCAGCAATTCTTGATTCTGATGGCGTTCTTCTTCAATGGAAGCCAGAAGAATCCCATCCTTGTAAATGGAGAGGAGTAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGCCTTCCTCATCACAAACTTAGTGGATCTTTATCCCCTGAACTTGGAAAACTTGACCACTTAAAAATTTTAGCACTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAGTGTTTCTGCAGGGTAATTACTTTAGTGGCTTCATTCCCAATGAATTGGGAAATCTTTCGGCAATTAAAAATTTAGATATTTCAAGTAACTCGCTCGGTGGAAATATTCCCATCTCGCTTGGGAACTTGAGCAAGCTTACTACCCTAAATGTGTCTGCGAATTTTCTGGTTGGATCAATACCGAATGTTGGAGTGCTAATCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGACGACAAAGAGGCACCTGGAACCAATGATTCACCATTCTCAGTGCAAAATCAATTTGTAAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGTTTTCTGTATAAAAAGTTCGGAAAAAATGACAGTAAAGGTCTAGTGCTGGACGTTTGTGGAGGCGCTTCGGGTGTAATGTTTCACGGAGACTTGCCATACTCATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATCGGATGTGGAGGCTTTGGAACCGTATACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATCATGAAACTGAATGAAGGCTTTGATCGGTTCTTTGAGAGAGAGCTCGAAATACTTGGAAGCATGAAGCACAGGTTCCTTGTGAACTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGTGTCCGTACTGAAGTATCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCACCGCGGATCATTCACAGAGACATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTAGAGTTTCTGATTTTGGACTTGCGAAGCTTTTAGCGGATGAAGAATCACATATTACAACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTACATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTATTGAGTGGCAAACGTCCCACCGATGCATCATTCATTGAAAAGGGGCTAAACATCGTTGGTTGGTTAAACTTTCTAGTCACAGAGAGCCGACAACGAGAAATCATTGACGTACAGTGCGAGGGAATGCGAACAGAAAGCCTCGACGCATTGGTTGCAGTTGCAATCCAATGCGTTTCATCGAGTCCAGAAGAACGCCCCACCATGCACAGGGTAGTCCAGATATTGGAGTCTGAGGTTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 1794 42.08 MAFYTVKWQWLLILYIVPLFTIMSRSSGTSSDGEALLSFRAAILDSDGVLLQWKPEESHPCKWRGVTCDPKTKRVIYLSLPHHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSAIKNLDISSNSLGGNIPISLGNLSKLTTLNVSANFLVGSIPNVGVLINFSESSFLGNRGLCGKQINVMCKDDKEAPGTNDSPFSVQNQFVRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASGVMFHGDLPYSSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIMKLNEGFDRFFERELEILGSMKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGVRTEVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLADEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTESRQREIIDVQCEGMRTESLDALVAVAIQCVSSSPEERPTMHRVVQILESEVMTPCPSDFYDTD 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11005838 11014617 + CmoCh01G013990.1 Cmo01g01399 374882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01399 597 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
Cmo01g01399 597 Gene3D Transferase(Phosphotransferase) domain 1 386 589 - -
Cmo01g01399 597 SMART serkin_6 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01399 597 SUPERFAMILY L domain-like 29 189 - -
Cmo01g01399 597 PANTHER RECEPTOR-LIKE PROTEIN 55 4 595 - -
Cmo01g01399 597 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cmo01g01399 597 ProSiteProfiles Protein kinase domain profile. 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01399 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cmo01g01399 597 Pfam Protein kinase domain 312 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g01399 597 SUPERFAMILY Protein kinase-like (PK-like) 296 581 IPR011009 -
Cmo01g01399 597 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 4 595 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cmo01g01399 597 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Cmo01g01399 597 Gene3D Phosphorylase Kinase; domain 1 287 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01399 Cmo-Chr1:11005838 Cmo04g00625 Cmo-Chr4:3105407 0 dispersed
Cmo09g00666 Cmo-Chr9:3333911 Cmo01g01399 Cmo-Chr1:11005838 8.08E-103 transposed
Cmo01g01399 Cmo-Chr1:11005838 Cmo09g00742 Cmo-Chr9:3721073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74056 PF00069 Pkinase 7.50E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01399 - - csv:101211605 1118.61