Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo01g01417 | ATGCAGTTATATCATCATCCATACTCTTTGAACAGCCAGAAGGTGAGACTTGCCCTGGAAGAGATAGGCATCGACTGCACGTCGTATCATGTCAATCCTATCACGGCCAAGAACATGGACTCCTCGTTCTTCAAGATGAACCCGAGTGCAAAACTTCCCGTCTTTCAAAATGGTTCCCATGTCATTTTCGACACGATCGAGATAATTCAGTATATCGAGAGAATTGCAGTTGTATCCTCGGGAACCAACGACGTAACGCCGAGTAGCCAAGAAGTTGTTGAATGGATGCATAAGATACAACAATGGAATCCAAAATTTTTCACTCTCGCCCACGTCCCCGAGAAGTACCGACTTACCGTTACCAAATTTATAAGGCGTGTCGTTATCAGTCGGATGGCCGAAACTCCTGAAATGGCAGCTGCATACCATCATAAGCTCAGAGAAGCATATGAGACAGAAGACAAACTGAAAAACAAAACTGTTATCAAACAAAGCACAGATCATTTAGTGAGACTTCTCGACGAAATCGAGTTGAAGCTAGGCGAAACTGCATTCTTGGCAGGGGAAGAGTTCACCATGGCTGATGCCGTGCTCATCCCGGTGCTGGCTCGACTCGAGCTGTTGAAGGTGGCGGACGAGTATATAGGCGGCAGCAGCAGCAGACCAAACATTGCAGAATATTGGATGTTGGTGCAGCAGAGGCCAAGCTATAAGAAGGTGATTGGAAAGTATTTCAAGGGATGGAGAAAGCACAAAACACTTATGAAAACATGGTGCTTTCTTCATATCAGAACCTTGCTAAGGAGATATTGA | 813 | 45.26 | MQLYHHPYSLNSQKVRLALEEIGIDCTSYHVNPITAKNMDSSFFKMNPSAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGTNDVTPSSQEVVEWMHKIQQWNPKFFTLAHVPEKYRLTVTKFIRRVVISRMAETPEMAAAYHHKLREAYETEDKLKNKTVIKQSTDHLVRLLDEIELKLGETAFLAGEEFTMADAVLIPVLARLELLKVADEYIGGSSSRPNIAEYWMLVQQRPSYKKVIGKYFKGWRKHKTLMKTWCFLHIRTLLRRY | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11126667 | 11128398 | + | CmoCh01G014170.1 | Cmo01g01417 | 374900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo01g01417 | 270 | CDD | GST_N_family | 1 | 73 | - | - | |
| Cmo01g01417 | 270 | Pfam | Glutathione S-transferase, C-terminal domain | 161 | 227 | - | - | |
| Cmo01g01417 | 270 | SUPERFAMILY | Thioredoxin-like | 1 | 74 | IPR036249 | - | |
| Cmo01g01417 | 270 | Gene3D | Glutaredoxin | 1 | 103 | - | - | |
| Cmo01g01417 | 270 | SFLD | Main (cytGST) | 1 | 234 | - | - | |
| Cmo01g01417 | 270 | Pfam | Glutathione S-transferase, N-terminal domain | 3 | 74 | IPR004045 | - | |
| Cmo01g01417 | 270 | Gene3D | - | 125 | 241 | - | - | |
| Cmo01g01417 | 270 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 80 | IPR004045 | - | |
| Cmo01g01417 | 270 | CDD | GST_C_family | 140 | 228 | - | - | |
| Cmo01g01417 | 270 | PANTHER | GLUTATHIONE S-TRANSFERASE TCHQD | 1 | 270 | IPR044617 | GO:0004364 | |
| Cmo01g01417 | 270 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 118 | 254 | IPR010987 | - | |
| Cmo01g01417 | 270 | SFLD | Glutathione Transferase (cytosolic) | 1 | 234 | IPR040079 | - | |
| Cmo01g01417 | 270 | SUPERFAMILY | GST C-terminal domain-like | 137 | 245 | IPR036282 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo01g01417 | Cmo09g00759 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01417 | Cmo-Chr1:11126667 | Cmo12g00335 | Cmo-Chr12:2098694 | 5.49E-07 | dispersed | |
| Cmo01g01417 | Cmo-Chr1:11126667 | Cmo09g00759 | Cmo-Chr9:3840186 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo01g01417 | K22077 | - | csv:101222476 | 490.73 |