Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01421 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTCGTTCGGGTCCTGACCAACACCCTCGAGACTTCCAGTTGTCCTCATATGCTCTTCTATGGACCGCCAGGTACCGGAAAAACCACCACCGCCCTCGCGATTGCTCATGAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAATTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCTGTAAGCAGTGGCCAACGCCAGGGGGGTTATCCTTGCCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAACCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTTATGGGTAAGCGTATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGAAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAGAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAACGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGCTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGCATGCAACTGTAA 1014 44.77 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMGKRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11145632 11149982 - CmoCh01G014210.1 Cmo01g01421 374904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01421 337 Gene3D - 3 173 IPR027417 -
Cmo01g01421 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cmo01g01421 337 CDD HLD_clamp_RFC 174 233 - -
Cmo01g01421 337 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Cmo01g01421 337 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Cmo01g01421 337 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Cmo01g01421 337 Gene3D - 176 244 - -
Cmo01g01421 337 Gene3D - 245 330 - -
Cmo01g01421 337 CDD AAA 26 166 - -
Cmo01g01421 337 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Cmo01g01421 337 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677|GO:0006260
Cmo01g01421 337 SMART AAA_5 41 174 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01421 Cmo-Chr1:11145632 Cmo16g01059 Cmo-Chr16:7436229 8.42E-64 dispersed
Cmo16g00815 Cmo-Chr16:4217683 Cmo01g01421 Cmo-Chr1:11145632 2.02E-15 dispersed
Cmo01g01421 Cmo-Chr1:11145632 Cmo15g00675 Cmo-Chr15:3298109 9.18E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01421 K10755 - csv:101221224 615.15